PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00001906.1.g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-YC
Protein Properties Length: 279aa    MW: 31111.2 Da    PI: 6.5077
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00001906.1.g00002.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC176.62.5e-55931961101
                           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkk 76 
                                     ql++fw+ q   iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k
  FANhyb_rscf00001906.1.g00002.1  93 QLQNFWAGQfqeIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQK 171
                                     89****9988889****************************************************************** PP

                           NF-YC  77 sdiaaavtrtdifdflvdivprdel 101
                                     +diaaa+trtdifdflvdivpr++l
  FANhyb_rscf00001906.1.g00002.1 172 NDIAAAITRTDIFDFLVDIVPREDL 196
                                     **********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.69E-3380187IPR009072Histone-fold
PfamPF008081.8E-21115178IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.2E-37116193IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSFLLFTSIR NWMDQQGHGQ PQSMGMVGSG AQMAYGTAPY QHTQMVGSPN PATVGAPVGG  60
IQASNQSAGA QLAQHQLAYQ HIHQQQQQQL QQQLQNFWAG QFQEIEKVTD FKNHSLPLAR  120
IKKIMKADED VRMISAEAPV IFARACEMFI LELTLRSWNH TEENKRRTLQ KNDIAAAITR  180
TDIFDFLVDI VPREDLKDEV LASIPRGTVS VGAADALPPY CYMPPQHGPQ VGAPGMIMGK  240
PMMDPSMYGQ QSHPYMGPQM WSQAPDQQQQ QQQQSPSDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_C1e-40103193294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
4csr_B1e-40103193294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165171RRTLQKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302444.10.0PREDICTED: nuclear transcription factor Y subunit C-9
SwissprotQ8L4B23e-88NFYC9_ARATH; Nuclear transcription factor Y subunit C-9
TrEMBLM5W0Q01e-155M5W0Q0_PRUPE; Uncharacterized protein
STRINGVIT_14s0128g00250.t011e-134(Vitis vinifera)
STRINGGLYMA19G42460.11e-134(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.45e-85nuclear factor Y, subunit C9