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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | FANhyb_rscf00001223.1.g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | Trihelix | ||||||||
Protein Properties | Length: 316aa MW: 36914.4 Da PI: 6.7491 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 81.1 | 1.5e-25 | 64 | 145 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 +W+ qe+++Li++r e+++++ ++k++k+lWe ++ +m+++g +rs++qCk+kw+nl +ryk +++ e + ++++ FANhyb_rscf00001223.1.g00001.1 64 QWSLQETKELITIRAELDQTFMETKRNKQLWEVIATQMKDKGHNRSAEQCKCKWKNLVTRYKGCETAEAET---MRQQF 139 7********************************************************************84...55679 PP trihelix 80 pyfdql 85 p+f++l FANhyb_rscf00001223.1.g00001.1 140 PFFNDL 145 ****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.5E-4 | 61 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 2.13E-24 | 63 | 128 | No hit | No description |
SuperFamily | SSF46689 | 4.89E-5 | 63 | 127 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 5.3E-20 | 64 | 146 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-4 | 64 | 120 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.06 | 65 | 121 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MDGHYPHRLH QQQQQELHQF QLQHQFQVVQ QPQQLLPPPP PHQHQHLSPP PITVHVDASD 60 RFPQWSLQET KELITIRAEL DQTFMETKRN KQLWEVIATQ MKDKGHNRSA EQCKCKWKNL 120 VTRYKGCETA EAETMRQQFP FFNDLATIMV AREQRLPGTE ADGNGGASGS KKKAAAVAVS 180 SDEDDEDHED SEEAGEKGIT SARKKKKVMK TGNIGSSSTG MGLGGNNVKE ILEDFMRQQL 240 QLDMQWRDEF QARENERRMR EYEWRQTMEA IENERLMAER EWREREERRR MREEARAEKR 300 DAILTALLDR LNRGGM |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004302587.1 | 1e-168 | PREDICTED: trihelix transcription factor GT-3b | ||||
Refseq | XP_011466470.1 | 1e-168 | PREDICTED: trihelix transcription factor GT-3b | ||||
Swissprot | O80450 | 3e-64 | TGT3B_ARATH; Trihelix transcription factor GT-3b | ||||
TrEMBL | B9HCX7 | 6e-96 | B9HCX7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s10240.1 | 2e-95 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1781 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 1e-56 | Trihelix family protein |