PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000920.1.g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 512aa    MW: 56724.5 Da    PI: 6.0796
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000920.1.g00007.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000625676323
                                    ETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                                    C++C k F +   L  H+r+H
  FANhyb_rscf00000920.1.g00007.1 56 CHICQKGFESGKALGGHMRMH 76
                                    ********************9 PP

2zf-C2H215.35.6e-05111133123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     ++C  Cgk F++k +L  H+r+H
  FANhyb_rscf00000920.1.g00007.1 111 HVCIECGKIFPSKKSLYGHMRSH 133
                                     56779*****************9 PP

3zf-C2H212.80.00035366388123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     y+C+ C+ksF ++  L  H+++H
  FANhyb_rscf00000920.1.g00007.1 366 YTCSLCNKSFQSHQALGGHMSSH 388
                                     9********************99 PP

4zf-C2H211.40.00096438460123
                                     EEETTTTEEESSHHHHHHHHHHT CS
                         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                     ++C +C+++F +   L  H+r+H
  FANhyb_rscf00000920.1.g00007.1 438 HQCRICNRTFLTGQALGGHMRSH 460
                                     79*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.6195481IPR007087Zinc finger, C2H2
SMARTSM003550.45476IPR015880Zinc finger, C2H2-like
PfamPF139125.4E-75576IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
PfamPF139122.2E-5111135IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-5111138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.53E-10111133No hitNo description
SMARTSM003554.9E-4111133IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.845111138IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SuperFamilySSF576676.53E-10361388No hitNo description
PfamPF139121.6E-9365389IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.157366393IPR007087Zinc finger, C2H2
SMARTSM003550.0025366388IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280368388IPR007087Zinc finger, C2H2
SuperFamilySSF576671.81E-5436462No hitNo description
PfamPF139121.2E-9438461IPR007087Zinc finger, C2H2
SMARTSM003550.019438460IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.556438460IPR007087Zinc finger, C2H2
PROSITE patternPS000280440460IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MDMEHQEIIT NPETTDSNNN NGGGLLIKLK MAKAEPFSEQ GNRKPETLAP RFTKICHICQ  60
KGFESGKALG GHMRMHVQES KGLIKSSSKS PKPNGATELF STSATDSGGE HVCIECGKIF  120
PSKKSLYGHM RSHPDRPYRG IEPPTQFSKN SSTSTLSDAL PQKPNLAEDQ QIDSAGTARV  180
WFGPNPKVVR DLVKVVPSWS KTAKRGRKGT SSLDSETDSE SDDDDDCADD EDAELDMTEA  240
VHDLMMLAQA NPKGAEEATN SNFMTKNNQD HDVKDIRVID YLGVAKKRKK LEIEEDGDLE  300
KPRNQLELGL DLKYDSEEEL SDSENSESIV LANMMKRKKR RKMKLEDLDG AVVVDHQHQS  360
HHHKVYTCSL CNKSFQSHQA LGGHMSSHNK LKNNNNNNIQ YSAEHDHHHQ SGSEDTNNAN  420
ANLTNTATQI DYDQAESHQC RICNRTFLTG QALGGHMRSH WNGPNDQAQS GQTGCKGLDI  480
DLNELPPMEY EQGIDYSGAG YATSSYNSVN LS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285289KKRKK
2335341KRKKRRK
3337341KKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296116.10.0PREDICTED: uncharacterized protein LOC101314738
TrEMBLA0A2P6QL910.0A0A2P6QL91_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004296116.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.14e-15C2H2 family protein