PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000602.1.g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LBD
Protein Properties Length: 209aa    MW: 22737.9 Da    PI: 8.658
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000602.1.g00007.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.22.5e-284105197
                          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 
                                     +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +l+l++a  +++r+ +++sl+yeA+ r+ +P  
  FANhyb_rscf00000602.1.g00007.1   4 SCNGCRVLRKGCSENCEIRPCIewiksPESQANATLFLAKFYGRAGLLNLINAGAQHQRPGIFKSLLYEACGRIVNPTF 82 
                                     6****************************************************************************** PP

                          DUF260  75 Gavgvilklqqqleqlkaelall 97 
                                     G+vg+++++++  +q+++e++l+
  FANhyb_rscf00000602.1.g00007.1  83 GSVGLLSSGNWAQCQAAVEAVLA 105
                                     ******************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.023109IPR004883Lateral organ boundaries, LOB
PfamPF031954.0E-224103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MRTSCNGCRV LRKGCSENCE IRPCIEWIKS PESQANATLF LAKFYGRAGL LNLINAGAQH  60
QRPGIFKSLL YEACGRIVNP TFGSVGLLSS GNWAQCQAAV EAVLAGLPIV ENNEPVPYLN  120
PVPPVNSCDI RHVSKDTSLG KTRNRFKRSR SKVQLGSITE AAAEWGRVNP LEFGQCSSGG  180
GGERSMQSVE TVEAPWEMNQ GQTGPGWKW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299077.11e-146PREDICTED: LOB domain-containing protein 42
SwissprotQ9CA302e-67LBD42_ARATH; LOB domain-containing protein 42
SwissprotQ9M8863e-67LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A2P6R1Q01e-120A0A2P6R1Q0_ROSCH; Putative transcription factor AS2-LOB family
STRINGXP_004299077.11e-145(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.12e-66LOB domain-containing protein 42