PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000590.1.g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 331aa    MW: 37030.4 Da    PI: 9.6127
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000590.1.g00003.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM130.11.6e-40181381128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 
                                     lppGfrFhPtdeelvv+yLkkk+++ +l+          +++  ++    ++ +e+ewyfFs+rd+ky++g r+nra++
  FANhyb_rscf00000590.1.g00003.1  18 LPPGFRFHPTDEELVVHYLKKKASSAPLPH---------CHHRRKK----ATFGEQEWYFFSPRDRKYPNGARPNRAAT 83 
                                     79*************************877.........3333233....334789*********************** PP

                             NAM  80 sgyWkatgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                     sgyWkatg+dk+vls+      ++++vg+kk Lvfy+g+ pkg kt+W+mheyrl
  FANhyb_rscf00000590.1.g00003.1  84 SGYWKATGTDKPVLSStdegggGTRKVGVKKALVFYRGKPPKGIKTNWIMHEYRL 138
                                     ***************98888877778***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-5313175IPR003441NAC domain
PROSITE profilePS5100543.81318174IPR003441NAC domain
PfamPF023656.3E-2819138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MESTDSSSGS QPPPQPNLPP GFRFHPTDEE LVVHYLKKKA SSAPLPHCHH RRKKATFGEQ  60
EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVLSST DEGGGGTRKV GVKKALVFYR  120
GKPPKGIKTN WIMHEYRLAD NNTSNKPPPG CHDLGNKKNS LRLDDWVLCR IYKKNNTHRP  180
MDQEDSMDDM MGSSFPLSKL HRLPPKSTTS TYGQFMDNDH NFYDGMVSSE GINTSASFLP  240
NSGMANSSLP LKRGLPNLYW NHDQEDEAGL SRRLHLDNSE STGNGSIATL LSQLPQTPPP  300
LHQQPMLGSQ LGGDALFRST QYQLPGMNWY S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-55101779168NO APICAL MERISTEM PROTEIN
1ut4_B1e-55101779168NO APICAL MERISTEM PROTEIN
1ut7_A1e-55101779168NO APICAL MERISTEM PROTEIN
1ut7_B1e-55101779168NO APICAL MERISTEM PROTEIN
3swm_A1e-551017712171NAC domain-containing protein 19
3swm_B1e-551017712171NAC domain-containing protein 19
3swm_C1e-551017712171NAC domain-containing protein 19
3swm_D1e-551017712171NAC domain-containing protein 19
3swp_A1e-551017712171NAC domain-containing protein 19
3swp_B1e-551017712171NAC domain-containing protein 19
3swp_C1e-551017712171NAC domain-containing protein 19
3swp_D1e-551017712171NAC domain-containing protein 19
4dul_A1e-55101779168NAC domain-containing protein 19
4dul_B1e-55101779168NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13653KKKASSAPLPHCHHRRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291668.10.0PREDICTED: NAC domain-containing protein 18-like
SwissprotQ9LD442e-98NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A2P6QB230.0A0A2P6QB23_ROSCH; Putative transcription factor NAM family
STRINGXP_004291668.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.15e-88NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]