PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000560.1.g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LBD
Protein Properties Length: 124aa    MW: 12624.4 Da    PI: 8.9192
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000560.1.g00004.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.63.7e-3731118187
                          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 
                                     +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll+++p ++r+da+ ++++eA+ar++dPvyG+v+
  FANhyb_rscf00000560.1.g00004.1  31 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLHHIPAHKRPDAVLTVCFEAQARLKDPVYGCVA 109
                                     7***********************9989*************************************************** PP

                          DUF260  79 vilklqqql 87 
                                     +i++lqqq+
  FANhyb_rscf00000560.1.g00004.1 110 HIFALQQQY 118
                                     *******96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.17630124IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3631118IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MNATTNPSGG CGGGGGSSSG GSAGGGGNAG PCGACKFLRR KCVAGCIFAP YFDSEQGAAH  60
FAAVHKVFGA SNVSKLLHHI PAHKRPDAVL TVCFEAQARL KDPVYGCVAH IFALQQQYPI  120
SGKF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306912.13e-80PREDICTED: LOB domain-containing protein 30
SwissprotO813235e-54LBD30_ARATH; LOB domain-containing protein 30
TrEMBLB9GPH42e-55B9GPH4_POPTR; Uncharacterized protein
STRINGPOPTR_0002s14990.15e-55(Populus trichocarpa)
STRINGGSMUA_Achr5P11330_0018e-55(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.19e-55LBD family protein