PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000421.1.g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 401aa    MW: 45737.9 Da    PI: 9.3095
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000421.1.g00006.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.6e-15697298
                                    EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                              B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82
                                    f +l+ s++l+ ++l +p +fa+++  +   s+ +tl  + g +W++ l  +   ++y++++GW++F +   ++ g f++F
  FANhyb_rscf00000421.1.g00006.1  6 FEKLILSSTLQAKQLKIPENFAKKFRDE--FSTYVTLSVPGGHVWRIGL-KKAAENKYWFQDGWQDFIERYSIRIGYFLIF 83
                                    45677788889999********999755..8899***************.3444555************************ PP

                                    EE-SSSEE..EEEEE- CS
                              B3 83 kldgrsefelvvkvfr 98
                                    +++g+s+f   v +f+
  FANhyb_rscf00000421.1.g00006.1 84 RYEGNSSF--IVNIFN 97
                                    ****9999..999885 PP

2B354.42.3e-17300394599
                                     -..-HHHHTT-E....E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                              B3   5 ltpsdvlksgrl....vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                     l ps+  + +++    +lp  fae++ +g++     ++l++ +g++W v++ yr+++    l++GW eF  +n+L egD
  FANhyb_rscf00000421.1.g00006.1 300 LRPSYLYRGCIMvslsYLPSCFAEKNlSGVSG---FIKLQSADGKQWPVRCLYRGGR--AKLSQGWYEFTVENNLLEGD 373
                                     556666666655666689********866643...5***************665555..66****************** PP

                                     EEEEEE-SSSEE..EEEEE-S CS
                              B3  79 fvvFkldgrsefelvvkvfrk 99 
                                     ++vF+l +++e  l+v vfr 
  FANhyb_rscf00000421.1.g00006.1 374 VCVFELLKTKEIVLKVNVFRV 394
                                     ******999999999999985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-21297IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-22297IPR015300DNA-binding pseudobarrel domain
CDDcd100173.29E-18497No hitNo description
PROSITE profilePS5086314.395599IPR003340B3 DNA binding domain
SMARTSM010191.7E-14699IPR003340B3 DNA binding domain
PfamPF023627.8E-13797IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-22289393IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-21290394IPR015300DNA-binding pseudobarrel domain
CDDcd100171.34E-20294393No hitNo description
SMARTSM010191.5E-16296395IPR003340B3 DNA binding domain
PfamPF023621.5E-15311394IPR003340B3 DNA binding domain
PROSITE profilePS5086312.957317395IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MKRPYFEKLI LSSTLQAKQL KIPENFAKKF RDEFSTYVTL SVPGGHVWRI GLKKAAENKY  60
WFQDGWQDFI ERYSIRIGYF LIFRYEGNSS FIVNIFNLTT AEINYPPNAL SGTGGTVCSN  120
QYQVFEEMED EDSVEIMGSS PSSIVTNTMR DKLFGDVANQ LTPGKNYSPP SLQNLFNGAK  180
HNWTDAGKLH TPKVAGFQGN NSTQDNGTER KKSKKAVDEV KSCTPGEGTQ SDKKTVRKRR  240
KRDPNLQESS AQHEQDVEIR FRFYESASAR KRTVTAEERE RAVNLAKTFE PVNPFCRVVL  300
RPSYLYRGCI MVSLSYLPSC FAEKNLSGVS GFIKLQSADG KQWPVRCLYR GGRAKLSQGW  360
YEFTVENNLL EGDVCVFELL KTKEIVLKVN VFRVQEEMLD L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-6926239615144B3 domain-containing transcription factor VRN1
4i1k_B2e-6926239615144B3 domain-containing transcription factor VRN1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290393.10.0PREDICTED: B3 domain-containing transcription factor VRN1
SwissprotQ8L3W11e-133VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A2P6PN020.0A0A2P6PN02_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004290393.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-133B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]