PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000370.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 419aa    MW: 46399.4 Da    PI: 6.3233
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000370.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM136.22.2e-4251432127
                             NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgk 72 
                                     ppGfrF Pt+eelv++yL +k++g++      ++++i+ +diy+++PwdLp+     +++++++w+fF++r++++a+g 
  FANhyb_rscf00000370.1.g00001.1   5 PPGFRFYPTEEELVSFYLPHKLDGTRkdvnRVMDRIIPVLDIYEFNPWDLPRnsgeICHGDQEQWFFFIPRQESEARGG 83 
                                     9***********************9955532333479999**********9546654445778**************** PP

                             NAM  73 rknratksgyWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyr 127
                                     r++r t++gyWkatg+   v+s+     ++ ++glk+t+vfy+grap+g+kt+W m+ey+
  FANhyb_rscf00000370.1.g00001.1  84 RPKRLTTTGYWKATGSPSYVYSSsssstNHGAIGLKRTMVFYTGRAPNGSKTEWKMNEYK 143
                                     **********************9766665566***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-453178IPR003441NAC domain
PROSITE profilePS5100548.1164178IPR003441NAC domain
PfamPF023651.5E-215143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MEDFPPGFRF YPTEEELVSF YLPHKLDGTR KDVNRVMDRI IPVLDIYEFN PWDLPRNSGE  60
ICHGDQEQWF FFIPRQESEA RGGRPKRLTT TGYWKATGSP SYVYSSSSSS TNHGAIGLKR  120
TMVFYTGRAP NGSKTEWKMN EYKAIEEDDQ LHAPSSSSNA APAPALRQEF SLCRVYKKSK  180
CLRAFDRRPS GTGDIMRRPT VTVQLPALPQ LGTDHHNEGS TYPTAISHAQ NIIPAAPNSY  240
NVEMERISTL SSSGSSSSGD HGQPSQSGQS TGSLPVAVDN GEPLWELDQL DWQEFSLCRV  300
YKKSKCLRAF DRRPSGTGDI MRRPTVTVQL PALPHLGTDH HNEGSTYPTA ISHAQNIIPA  360
APNSYNVEME RISTLSSSGS SSSGDHGQPS QSGQSTGSLP VAVDNGEPLW ELDQLDWFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-33417817165NO APICAL MERISTEM PROTEIN
1ut4_B4e-33417817165NO APICAL MERISTEM PROTEIN
1ut7_A4e-33417817165NO APICAL MERISTEM PROTEIN
1ut7_B4e-33417817165NO APICAL MERISTEM PROTEIN
3swm_A4e-33417820168NAC domain-containing protein 19
3swm_B4e-33417820168NAC domain-containing protein 19
3swm_C4e-33417820168NAC domain-containing protein 19
3swm_D4e-33417820168NAC domain-containing protein 19
3swp_A4e-33417820168NAC domain-containing protein 19
3swp_B4e-33417820168NAC domain-containing protein 19
3swp_C4e-33417820168NAC domain-containing protein 19
3swp_D4e-33417820168NAC domain-containing protein 19
4dul_A4e-33417817165NAC domain-containing protein 19
4dul_B4e-33417817165NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303531.10.0PREDICTED: NAC domain-containing protein 90-like
TrEMBLA0A2P6RC901e-172A0A2P6RC90_ROSCH; Putative transcription factor NAM family
STRINGXP_004303531.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-61NAC domain containing protein 90