PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000170.1.g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 558aa    MW: 60908.2 Da    PI: 7.097
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000170.1.g00006.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-11351393754
                                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                     ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  FANhyb_rscf00000170.1.g00006.1 351 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 393
                                     79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58344393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-17347416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-13350399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-9350393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-16351407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.05E-12351397No hitNo description
CDDcd048736.88E-6464505No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MLPRLNGGIW MEDREERDAG DWARTAGAGA GSSKDEMGSL SNFKSMLEVE DEWYLNNNNN  60
GIQGHSDVVR DLTFSPSFAD PESLLLNQVD SSSSCSPSSS VFNNLDPSQV QYYLHQNPSL  120
SSMLNAVPNN NNNPLDHGFD LGCEIGFLDN QGSSLMNRGG GVLTRFNDLS SNTHMQPQNI  180
CSNLQFTTTR LPHLLENSTN FSGFRGVDDA SGNGLFNNRS KMLRPLQPLS SVGAQPTLFQ  240
KRAAKNLGGN GGNLSGLGSE GGLVLSNYEG GKGKRDMGEE NEKKRKFSGG DDGEDLSLDG  300
SGLNYDSDEF TENNKVDENG KNVGNSSNAN STVTGGEHKG KKKGLPAKNL MAERRRRKKL  360
NDRLYMLRSV VPKISKMDRA SILGDAIEYL KELLQRINNL HNELESLPPG SALTPTASTF  420
HPLTPTPPTL PSRIKEELCP SLPSPNGQPA RVEVRLREGR AVNIHMFCGR RPGLLLSTMR  480
AVDNLGLDIQ QAVISCFNGF AMDIFRAEVI LLHPVIAMQG RPRRPPRAYK GSTIGFSWLP  540
WHDIGVASEQ QTGVALPR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340358KKKGLPAKNLMAERRRRKK
2352359ERRRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297495.20.0PREDICTED: transcription factor ICE1
SwissprotQ9LSE21e-123ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0S2CW820.0A0A0S2CW82_PRUMU; Inducer of CBF expression a
STRINGPOPTR_0012s10780.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-109bHLH family protein