PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000100.1.g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TCP
Protein Properties Length: 349aa    MW: 39411.3 Da    PI: 10.7765
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000100.1.g00009.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP140.31.6e-43251642134
                             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssasec. 73 
                                      gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+skti+WL++++k ai el ++      s++++ ++ 
  FANhyb_rscf00000100.1.g00009.1  25 SGKKDRHSKIYTAQGPRDRRMRLSVQIARKFFDLQDMLGFDKASKTIDWLFTKSKSAINELKQQlvlrtcSTINSLSTs 103
                                     68*****************************************************************998444442222 PP

                             TCP  74 .eaesssssasnsssgkaaksaakskksqksaasalnlakesrakarararertrekmrikn 134
                                      e+++ +s++ ++ +++++      +++++++   + + k sr +arararertr+k ri+ 
  FANhyb_rscf00000100.1.g00009.1 104 aESNEVVSQTMQDLKSDSSIGR-MINRDPRKNIRRSRVGKGSRDQARARARERTRQKLRIRL 164
                                     2334444444444444444444.55555555555799*********************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-3926160IPR005333Transcription factor, TCP
PROSITE profilePS5136937.3692785IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.191142159IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MMEEEKIQSS KKKRKAAAAP RKRSSGKKDR HSKIYTAQGP RDRRMRLSVQ IARKFFDLQD  60
MLGFDKASKT IDWLFTKSKS AINELKQQLV LRTCSTINSL STSAESNEVV SQTMQDLKSD  120
SSIGRMINRD PRKNIRRSRV GKGSRDQARA RARERTRQKL RIRLSCQVQA NHDEANPKDL  180
GLCLGEEAEK HTNHELLEQG RTNSAMRNNA DDHKTLMGRS ISARSRASFK DDGCEVPGFT  240
GNWGSKMQSI HPRKMTRNVT ESFTGNNLLQ VENPSTPIMG LTSKYQEPSS TTTSRLSFST  300
NSQEQSYSGT YSNSCSINFI PNQDHNPNSI FIATLISPDQ NPGQFLKFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-123285154Putative transcription factor PCF6
5zkt_B1e-123285154Putative transcription factor PCF6
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298309.10.0PREDICTED: transcription factor TCP18
TrEMBLA0A2P6R1X61e-157A0A2P6R1X6_ROSCH; Putative transcription factor TCP family
STRINGXP_004298309.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-29TCP domain protein 12