PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000079.1.g00014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TCP
Protein Properties Length: 220aa    MW: 24092.6 Da    PI: 8.4067
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000079.1.g00014.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.56.8e-3670142474
                             TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..e 74 
                                     + + ++++hTkv+gR+RRvR++a caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tgt++++a+ c  +
  FANhyb_rscf00000079.1.g00014.1  70 RSTNTKDRHTKVNGRGRRVRMPAMCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGTGTQPAQLCtsT 142
                                     6789**********************************************************99999877422 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-2972159IPR005333Transcription factor, TCP
PROSITE profilePS5136927.64474128IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MGSEMALQDY LSPDPPRHHH QPILPSLKLE DLTQSVAVPT AVLHPTTTTV TTGDNSGRMT  60
AAQQLSGTRR STNTKDRHTK VNGRGRRVRM PAMCAARIFQ LTRELGHRSD GETIEWLLRH  120
AEPSIIAATG TGTQPAQLCT STPSMPVSIP SLPCRPTVTT ASAGQFIYHH LQLPVSQAHN  180
QQQQLSCRLD LCQPVDPLCL TMAIDIMVEQ FASRFVLSIS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468122.11e-108PREDICTED: transcription factor PCF1
TrEMBLA0A2P6RAZ71e-79A0A2P6RAZ7_ROSCH; Putative transcription factor TCP family
STRINGEMJ088545e-54(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38193363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.16e-36TCP family protein