PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000062.1.g00018.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 713aa    MW: 79329.5 Da    PI: 4.7536
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000062.1.g00018.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1707.6e-5391431127
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknra 77 
                                     lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+++d++k+ePwdLpk  ++k++++ew+fF++rd+ky++g+r+nra
  FANhyb_rscf00000062.1.g00018.1   9 LPLGFRFRPTDEELINHYLRLKINGRHSEV-QVIPDIDVCKWEPWDLPKlsMIKSDDQEWFFFCPRDRKYPNGHRSNRA 86 
                                     699************************999.99***************5458899999********************* PP

                             NAM  78 tksgyWkatgkdkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyr 127
                                     t++gyWkatgkd++++s+       ++ lvg+kktLvfy+grapkge+t+W+mheyr
  FANhyb_rscf00000062.1.g00018.1  87 TDAGYWKATGKDRTIKSRqfksaanSTGLVGMKKTLVFYRGRAPKGERTSWIMHEYR 143
                                     *****************977666554555***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-604167IPR003441NAC domain
PROSITE profilePS5100557.0829167IPR003441NAC domain
PfamPF023656.8E-2710143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MAVLSMGSLP LGFRFRPTDE ELINHYLRLK INGRHSEVQV IPDIDVCKWE PWDLPKLSMI  60
KSDDQEWFFF CPRDRKYPNG HRSNRATDAG YWKATGKDRT IKSRQFKSAA NSTGLVGMKK  120
TLVFYRGRAP KGERTSWIMH EYRPTQKELD GTAPGQCAYV LCRLFHKPEE KAEVLKYDEV  180
DQPGLSPTTS PDETSSDVVQ ESPTPDMKGG KESEGISKWN DSFDHMTPDT VTMPPIDSYM  240
ASDVEVYGPE ETIFSGEMGF FEPTFDCKIF SPSHTPFDAE LDYVGSPLEF GNHSNGSYFQ  300
DGTCEQDVYL PEVFDEVGNK NYESSLEESQ KNLVVGSEAY LSDSFMLQDI PPENPWLNGA  360
WGYTDAKAAQ HNLDTGARGL SNEQFDTEDL LRKTSFGACQ AEAPASLYDH KPALENIGYS  420
GYSYPDSAVS NILDGSTRLN DVDNHSSDQV GGPKIKIRSR LPQERPNSNF VDQGSANRRL  480
RLAVGNHTRV SNHSKEEDEG HSTITEAREA GQSTSDEWEK VHAIDDEEEV TSRDYSVNND  540
YDLGGKNGIS CETNQPPEPS NSGKPVTRGM ARRIRLAVNG SPGSVANSNV SDTKYGQEDK  600
VKSSITEASE TTEETPHLNE QEVKCHPMRL DANQKIAEEP STTLVDENKK TTEEAATKTR  660
SRTGGDDNLL HSGHIGMSVP SKNRCLNTVF IITVGIPLVL TMFVAFSGIW TSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-42416712165NO APICAL MERISTEM PROTEIN
1ut4_B1e-42416712165NO APICAL MERISTEM PROTEIN
1ut7_A1e-42416712165NO APICAL MERISTEM PROTEIN
1ut7_B1e-42416712165NO APICAL MERISTEM PROTEIN
3swm_A1e-42416715168NAC domain-containing protein 19
3swm_B1e-42416715168NAC domain-containing protein 19
3swm_C1e-42416715168NAC domain-containing protein 19
3swm_D1e-42416715168NAC domain-containing protein 19
3swp_A1e-42416715168NAC domain-containing protein 19
3swp_B1e-42416715168NAC domain-containing protein 19
3swp_C1e-42416715168NAC domain-containing protein 19
3swp_D1e-42416715168NAC domain-containing protein 19
3ulx_A1e-42817014171Stress-induced transcription factor NAC1
4dul_A1e-42416712165NAC domain-containing protein 19
4dul_B1e-42416712165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309509.10.0PREDICTED: uncharacterized protein LOC101295292
TrEMBLA0A2P6P4B30.0A0A2P6P4B3_ROSCH; Putative transcription factor NAM family
STRINGXP_004309509.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136251825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-123NAC transcription factor-like 9