PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000018.1.g00013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 581aa    MW: 65400.2 Da    PI: 9.0621
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000018.1.g00013.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM111.31.1e-34131671128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLp.k........kvkaeekewy 59 
                                     lp+G++F+Ptd+el+ e+L++kve+k+      +   +    +i+   +i++++P++Lp +         v+ +  + +
  FANhyb_rscf00000018.1.g00013.1  13 LPAGVKFDPTDQELI-EHLEAKVEAKDtkshplI---DefipTIEGEdGICYTHPEKLPgHhllssslvGVTRDGLSRH 87 
                                     799************.99*******996665443...133333666646**********5478877655333445588* PP

                             NAM  60 fFskrdkkyatgkrknra..........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmhey 126
                                     fF++ +k+y+tg+rk+r+            + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y
  FANhyb_rscf00000018.1.g00013.1  88 FFHRPSKAYTTGTRKRRKiqtecdhlqaGGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQY 165
                                     *****************8566666665433778************.999***********5547999999********* PP

                             NAM 127 rl 128
                                     +l
  FANhyb_rscf00000018.1.g00013.1 166 HL 167
                                     98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-377186IPR003441NAC domain
PROSITE profilePS5100532.1113186IPR003441NAC domain
PfamPF023657.6E-1614167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MEINWCLQDW LGLPAGVKFD PTDQELIEHL EAKVEAKDTK SHPLIDEFIP TIEGEDGICY  60
THPEKLPGHH LLSSSLVGVT RDGLSRHFFH RPSKAYTTGT RKRRKIQTEC DHLQAGGETR  120
WHKTGKTRPV MVNGKQKGCK KILVLYTNFG KNRKPEKTNW VMHQYHLGQH EEEKEGELVV  180
SKIFYQTQPR QCNWSSERSS AASASLTGEG SSDLRRDSGG SGSCTSSKEI IVSHNTHLRD  240
HHDQMSAAAA VAQVNVVAQP LTSYNAIDIH QLKSDHFSFV PFRKSFDEVG IGEASTAREP  300
SIASGTCEDL RERPQLHHVA HDQLLHHHQH QQQVHHEQQQ HQHGQTHLQQ QIATAASFHI  360
SRPSHPISTI ISPPSLHHSA TSIILDQDAY HVSRSIMLQN EHFQQQQQQQ QQQQQQQQQQ  420
QQQHHKQMGG RSASGLEELI MACTSSSNVK EESSSMANPQ EAEWMKNQRY KYGVVRERTS  480
ARLLKCRRPS VRHRTAPARA HLHPSRLHQR SLAIFIPASL LNSSFPAIST LFEVLGDLAR  540
KLEFGGLTGQ GKWSGTLLES AGVKASSRRR RTVDNGGMPA L
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024179478.10.0NAC domain-containing protein 75-like isoform X3
SwissprotQ9M0F81e-159NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A2P6RJY30.0A0A2P6RJY3_ROSCH; Putative transcription factor NAM family
STRINGXP_004287496.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45203458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-116NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]