PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon19146025_s.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 95aa    MW: 10999.7 Da    PI: 10.1889
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon19146025_s.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.44.1e-3419040128
                               NAM  40 ykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapk 115
                                       yk++Pw+Lp k+  +++ewyfF++rd+ky++g+r+nra+  gyWkatg+dk++ls+ +++ +g+kk Lvfy+g+ pk
  FANhyb_icon19146025_s.1.g00001.1   1 YKYNPWELPPKALFGKEEWYFFTPRDRKYPNGTRPNRAAGLGYWKATGTDKHILSScGTKSIGVKKALVFYTGHPPK 77 
                                       799*****966667899**************************************988889**************** PP

                               NAM 116 gektdWvmheyrl 128
                                       g+kt+W+m+eyrl
  FANhyb_icon19146025_s.1.g00001.1  78 GVKTEWIMNEYRL 90 
                                       ***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.14E-36193IPR003441NAC domain
PROSITE profilePS5100538.699195IPR003441NAC domain
PfamPF023654.6E-151090IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
YKYNPWELPP KALFGKEEWY FFTPRDRKYP NGTRPNRAAG LGYWKATGTD KHILSSCGTK  60
SIGVKKALVF YTGHPPKGVK TEWIMNEYRL LDTTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-4219258147NAC domain-containing protein 19
3swm_B4e-4219258147NAC domain-containing protein 19
3swm_C4e-4219258147NAC domain-containing protein 19
3swm_D4e-4219258147NAC domain-containing protein 19
3swp_A4e-4219258147NAC domain-containing protein 19
3swp_B4e-4219258147NAC domain-containing protein 19
3swp_C4e-4219258147NAC domain-containing protein 19
3swp_D4e-4219258147NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306241.15e-64PREDICTED: NAC transcription factor 29-like
SwissprotQ9LD441e-45NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A2P6RAS57e-64A0A2P6RAS5_ROSCH; Putative transcription factor NAM family
STRINGXP_004306241.12e-63(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.14e-48NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]