PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00049977_a.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 50aa    MW: 5750.57 Da    PI: 8.7789
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00049977_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS24.92.4e-08643338374
                              GRAS 338 klllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                       + llrk++ ++++rv+e++g++ l Wk++p+ ++S W+
  FANhyb_icon00049977_a.1.g00001.1   6 RGLLRKYDsNWEMRVDEKDGCAGLWWKGQPVSFCSLWK 43 
                                       779*****9999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035148.2E-6643IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 50 aa     Download sequence    Send to blast
AIDGGRGLLR KYDSNWEMRV DEKDGCAGLW WKGQPVSFCS LWKIGNQHKL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011457863.17e-30PREDICTED: nodulation-signaling pathway 1 protein
SwissprotQ4VYC89e-19NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A2P6RYN62e-24A0A2P6RYN6_ROSCH; Putative transcription factor GRAS family
STRINGXP_004292129.13e-29(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68743447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.15e-17GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]