PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00049977_a.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 50aa    MW: 5750.57 Da    PI: 8.7789
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00049977_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS24.92.4e-08643338374
                              GRAS 338 klllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                       + llrk++ ++++rv+e++g++ l Wk++p+ ++S W+
  FANhyb_icon00049977_a.1.g00001.1   6 RGLLRKYDsNWEMRVDEKDGCAGLWWKGQPVSFCSLWK 43 
                                       779*****9999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035148.2E-6643IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 50 aa     Download sequence    Send to blast
AIDGGRGLLR KYDSNWEMRV DEKDGCAGLW WKGQPVSFCS LWKIGNQHKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011457863.13e-30PREDICTED: nodulation-signaling pathway 1 protein
SwissprotQ4VYC87e-20NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLM5X9414e-25M5X941_PRUPE; Uncharacterized protein
STRINGPGSC0003DMT4000896922e-22(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68743447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.15e-17GRAS family protein