PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00029204_a.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 155aa    MW: 17904.1 Da    PI: 8.0806
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00029204_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.93.4e-18158854128
                               NAM  54 eekewyfFskrdkkyat..gkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                        + ewyfFs+r  k+ +  ++  nr++k g Wk++g+d++++  +ge++g +++++fy    pk +ktdWv+hey l
  FANhyb_icon00029204_a.1.g00001.1  15 PDMEWYFFSPRVFKHINskSTMINRTAKGGSWKKQGNDRRITGCSGEKIGGRRIFTFY---LPKKQKTDWVIHEYYL 88 
                                       567********988775216678999********************************...677889********87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.0781108IPR003441NAC domain
PfamPF023653.3E-111387IPR003441NAC domain
SuperFamilySSF1019411.7E-2013106IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
AEFLDREWFT MADSPDMEWY FFSPRVFKHI NSKSTMINRT AKGGSWKKQG NDRRITGCSG  60
EKIGGRRIFT FYLPKKQKTD WVIHEYYLTK ADSDEQIGDF VLCRLKDNRL KKKSGKPDHD  120
RQDAPLCDED QAFSELGHVV IPKGNDDEAK AEHGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-141810572162NO APICAL MERISTEM PROTEIN
1ut4_B1e-141810572162NO APICAL MERISTEM PROTEIN
1ut7_A1e-141810572162NO APICAL MERISTEM PROTEIN
1ut7_B1e-141810572162NO APICAL MERISTEM PROTEIN
3swm_A1e-141810575165NAC domain-containing protein 19
3swm_B1e-141810575165NAC domain-containing protein 19
3swm_C1e-141810575165NAC domain-containing protein 19
3swm_D1e-141810575165NAC domain-containing protein 19
3swp_A1e-141810575165NAC domain-containing protein 19
3swp_B1e-141810575165NAC domain-containing protein 19
3swp_C1e-141810575165NAC domain-containing protein 19
3swp_D1e-141810575165NAC domain-containing protein 19
4dul_A1e-141810572162NAC domain-containing protein 19
4dul_B1e-141810572162NAC domain-containing protein 19
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308753.14e-92PREDICTED: NAC domain-containing protein 18-like
TrEMBLA0A2P6SC502e-59A0A2P6SC50_ROSCH; Putative transcription factor NAM family
STRINGXP_004308753.11e-91(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.15e-17NAC domain containing protein 28