PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00027555_a.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 126aa    MW: 14572.7 Da    PI: 9.3197
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00027555_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1163.8e-36261251100
                               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrkn 75 
                                       lppGfrF+Ptd elv++yLk+k+ gkkl++ +v++evdiyk+ PwdLp k + ++++ +wyfF++r+kkya+g r n
  FANhyb_icon00027555_a.1.g00001.1  26 LPPGFRFNPTDVELVQYYLKRKIMGKKLHV-KVVAEVDIYKWAPWDLPdKsCWRSGDLKWYFFCPREKKYASGGRVN 101
                                       79****************************.99**************96446777888******************* PP

                               NAM  76 ratksgyWkatgkdkevlskkgelv 100
                                       rat+ gyWk+tgkd++vl  ++e+v
  FANhyb_icon00027555_a.1.g00001.1 102 RATDCGYWKTTGKDRSVLY-NSEVV 125
                                       *****************98.66555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-4018126IPR003441NAC domain
PROSITE profilePS5100538.28526126IPR003441NAC domain
PfamPF023655.0E-1827116IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
NLDIGEDHSY ILGTFHLDSV MGKSSLPPGF RFNPTDVELV QYYLKRKIMG KKLHVKVVAE  60
VDIYKWAPWD LPDKSCWRSG DLKWYFFCPR EKKYASGGRV NRATDCGYWK TTGKDRSVLY  120
NSEVVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-34121261113Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290501.18e-73PREDICTED: NAC domain-containing protein 78-like
RefseqXP_011458487.18e-73PREDICTED: NAC domain-containing protein 78-like
SwissprotQ9FY828e-55NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A2P6PRT73e-66A0A2P6PRT7_ROSCH; Putative transcription factor NAM family
STRINGXP_004290501.13e-72(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.43e-57NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]