PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00017195_a.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 84aa    MW: 9481.54 Da    PI: 10.2371
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00017195_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-202272255
                               AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                                      +y+GVr+++ +g+++AeIrd    + + +r++lg+f taeeAa+a+++a+ +++g
  FANhyb_icon00017195_a.1.g00001.1 22 RYRGVRRRP-WGKFAAEIRDS---NrHGQRVWLGTFNTAEEAARAYDRAAYAMRG 72
                                      6********.**********4...3234*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.23E-162281No hitNo description
PROSITE profilePS5103223.7092280IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-242281IPR016177DNA-binding domain
SMARTSM003801.2E-312284IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-322282IPR001471AP2/ERF domain
PfamPF008475.2E-162272IPR001471AP2/ERF domain
PRINTSPR003677.0E-122334IPR001471AP2/ERF domain
PRINTSPR003677.0E-124662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MAEDHRGGKV QTGEGKDAGE VRYRGVRRRP WGKFAAEIRD SNRHGQRVWL GTFNTAEEAA  60
RAYDRAAYAM RGGLAILNFP NEYP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-331183375Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297818.12e-56PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LSX04e-33ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBLA0A3Q8TD051e-43A0A3Q8TD05_FRAAN; Transcription factor ERF83
STRINGXP_004297818.19e-56(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.13e-25ERF family protein
Publications ? help Back to Top
  1. Zander M,Thurow C,Gatz C
    TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression.
    Plant Physiol., 2014. 165(4): p. 1671-1683
    [PMID:24989234]