PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00012135_a.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LBD
Protein Properties Length: 86aa    MW: 9498.16 Da    PI: 9.4658
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00012135_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26083.82.5e-26486178
                            DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74
                                      +C++C++lr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+y
  FANhyb_icon00012135_a.1.g00001.1  4 SCNGCRILRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPENLRPAIFRSLLYEACGRIVNPIY 82
                                      6****************************************************************************** PP

                            DUF260 75 Gavg 78
                                      G+vg
  FANhyb_icon00012135_a.1.g00001.1 83 GSVG 86
                                      *997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.332386IPR004883Lateral organ boundaries, LOB
PfamPF031959.8E-22486IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEN  60
LRPAIFRSLL YEACGRIVNP IYGSVG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693111.16e-58PREDICTED: LOB domain-containing protein 41
RefseqXP_026380916.16e-58LOB domain-containing protein 41-like
RefseqXP_026386660.17e-58LOB domain-containing protein 41-like
SwissprotQ9M8865e-55LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A2U1PPB12e-56A0A2U1PPB1_ARTAN; Lateral organ boundaries domain-containing protein
STRINGXP_010693111.12e-57(Beta vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-57LOB domain-containing protein 41