PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00010169_a.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 74aa    MW: 7707.84 Da    PI: 9.2924
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00010169_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.88.5e-143053427
                                      ---SGGGGTS--TTTTT-SS-SSS CS
                           zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                                      ++C ++++tGtCkyG++C+F H+p
  FANhyb_icon00010169_a.1.g00001.1 30 VICVYYLKTGTCKYGASCRFDHPP 53
                                      68********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.9862654IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-82653IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-73053IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-103053IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-73151IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
PAVPLSTTKP SQQENVKLTL AGLPRREGAV ICVYYLKTGT CKYGASCRFD HPPPGEVVAM  60
AASQAKSDST GGKA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024199054.11e-44zinc finger CCCH domain-containing protein 37-like isoform X2
RefseqXP_024199520.14e-43zinc finger CCCH domain-containing protein 37-like isoform X1
RefseqXP_024199521.13e-43zinc finger CCCH domain-containing protein 37-like isoform X2
RefseqXP_024199522.12e-43zinc finger CCCH domain-containing protein 37-like isoform X3
RefseqXP_024199523.12e-43zinc finger CCCH domain-containing protein 37-like isoform X4
SwissprotQ941Q31e-22C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2P6Q7V25e-42A0A2P6Q7V2_ROSCH; Putative transcription factor C3H family
TrEMBLA0A2P6Q7X97e-42A0A2P6Q7X9_ROSCH; Putative transcription factor C3H family
TrEMBLA0A2P6Q7Y61e-40A0A2P6Q7Y6_ROSCH; Putative transcription factor C3H family
STRINGXP_004295542.13e-42(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.16e-25floral homeotic protein (HUA1)