PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00009606_a.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 117aa    MW: 12868.2 Da    PI: 4.3826
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00009606_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.83.6e-0962116148
                               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLp 48 
                                       lp+G++F+Ptd+e++ ++L++kv +++      +  +e+i+++d    i++++P++Lp
  FANhyb_icon00009606_a.1.g00001.1  62 LPAGVKFDPTDQEIL-QHLEAKVLTDTrklhplI--DEFIPTLDgengICSTHPEKLP 116
                                       799***********9.99****999995664322..234655555556*********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.24E-956117IPR003441NAC domain
PROSITE profilePS5100512.50362117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MTWHSDDEEP EERAAVQSIT PSSATYPQQS KNNKNNEISS CPSCGHPIDF QDQAGIHDLP  60
GLPAGVKFDP TDQEILQHLE AKVLTDTRKL HPLIDEFIPT LDGENGICST HPEKLPG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293895.16e-79PREDICTED: NAC domain-containing protein 8 isoform X1
SwissprotO494592e-41NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A1L1Y2872e-77A0A1L1Y287_9ROSA; NAC transcription factor 1
STRINGXP_004293895.12e-78(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1752645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.17e-44NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]