PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00001436_a.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 87aa    MW: 9822.13 Da    PI: 10.2643
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00001436_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM713.1e-2226765128
                               NAM  65 dkkyatgkrknratksgyWkatgkdkevlskkgel..vglkktLvfykgrapkgektdWvmheyrl 128
                                        +ky+++ r+nr+t sg+Wkatg dk+++s+++ l  +glkk+Lv+y+g+a kg+ktdW+m+e+rl
  FANhyb_icon00001436_a.1.g00001.1   2 GRKYRNSVRPNRVTGSGFWKATGIDKPIYSAEEPLecIGLKKSLVYYRGSAGKGTKTDWMMNEFRL 67 
                                       589***************************7443356***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.574187IPR003441NAC domain
SuperFamilySSF1019415.75E-23175IPR003441NAC domain
PfamPF023655.8E-91167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
RGRKYRNSVR PNRVTGSGFW KATGIDKPIY SAEEPLECIG LKKSLVYYRG SAGKGTKTDW  60
MMNEFRLPPN GKSATYFLNA KDNTEEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-1916779142NO APICAL MERISTEM PROTEIN
1ut4_B6e-1916779142NO APICAL MERISTEM PROTEIN
1ut7_A6e-1916779142NO APICAL MERISTEM PROTEIN
1ut7_B6e-1916779142NO APICAL MERISTEM PROTEIN
3swm_A7e-1916782145NAC domain-containing protein 19
3swm_B7e-1916782145NAC domain-containing protein 19
3swm_C7e-1916782145NAC domain-containing protein 19
3swm_D7e-1916782145NAC domain-containing protein 19
3swp_A7e-1916782145NAC domain-containing protein 19
3swp_B7e-1916782145NAC domain-containing protein 19
3swp_C7e-1916782145NAC domain-containing protein 19
3swp_D7e-1916782145NAC domain-containing protein 19
4dul_A6e-1916779142NAC domain-containing protein 19
4dul_B6e-1916779142NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303892.12e-55PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK558e-36NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A2P6S0G75e-53A0A2P6S0G7_ROSCH; Putative transcription factor NAM family
STRINGXP_004303892.17e-55(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-38NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]