PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462969908
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 348aa    MW: 37805 Da    PI: 9.5604
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462969908genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.71.9e-15105154355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  462969908 105 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 154
                9***************999754...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.509168IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-91969IPR016177DNA-binding domain
SMARTSM003801.2E-92074IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-73869IPR001471AP2/ERF domain
CDDcd000183.06E-24103164No hitNo description
SuperFamilySSF541715.82E-18103163IPR016177DNA-binding domain
SMARTSM003802.9E-33104168IPR001471AP2/ERF domain
PROSITE profilePS5103219.19104162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-18104162IPR001471AP2/ERF domain
PfamPF008474.0E-10105154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
QKQPVHHRKS IDTFGQRTSQ YRGVTSCKKE GQTRKGRQGG YDMEEKAARA YDLAALKYWG  60
PSTHINFPLE DYQEELEEMK NMTRQEYVAH LRRKSSGFSR GASMYRGVTR HHQHGRWQAR  120
IGRVSGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN FDITRYDVDK IMASNTLLPG  180
DLARRKKDDD VAATNANDAD AAAAAALAPV ADTWKIAAAL SAARAGNGGG EHQQVNQHHH  240
DVLSGEAFSS VLHDLVATGG AAQHMPMSSA TSSLVTSLSN SREGSPDRGG GLSMLFSKPS  300
PSPSQQQHHQ ASNNKPMSPS SLPPLGSWAR PAAVSIAHLP LFAAWTDA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462969908
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0882630.0BT088263.1 Zea mays full-length cDNA clone ZM_BFc0105N21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155443.11e-169AP2-like ethylene-responsive transcription factor ANT isoform X2
SwissprotQ84Z021e-167CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A3B6C5931e-172A0A3B6C593_WHEAT; Uncharacterized protein
TrEMBLA0A446M9B61e-172A0A446M9B6_TRITD; Uncharacterized protein
TrEMBLA0A446M9E31e-172A0A446M9E3_TRITD; Uncharacterized protein
STRINGPavir.Ba03911.1.p1e-175(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-105AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]