PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462967047
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 348aa    MW: 37670.9 Da    PI: 8.6559
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462967047genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH421.5e-13274299126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +ktelC+ + +tG C+yGd C+FaHg
  462967047 274 FKTELCNKWEATGACSYGDLCQFAHG 299
                79***********************8 PP

2zf-CCCH18.24.4e-06312337126
                --S---SGGGGTS.--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHg 26 
                ykt  Cr+ ++ G  C++G rC+F H+
  462967047 312 YKTGVCRTVLA-GvLCPFGHRCHFRHS 337
                99*********.66**********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.6E-15268306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-9270305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.615273301IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-8273300IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10274299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-10307338IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-7308337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.174311339IPR000571Zinc finger, CCCH-type
SMARTSM003560.024311338IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEALLPAAQH EGLHAAFGHM PFGLGDGRFS SPNLLTNGGD LFWGGYYPHP FGIVPVHCYS  60
ASPSPRTASR SRSSSDTSSV LDVGDDSPAA LARLALHSVL DVGDDSPAAL VRLALKYQEA  120
AGRYHLFLSH LVDTTYGEVA LRRENDLLRS ATVDLVRRIV LVGGKHSSAI ALADEFRRLT  180
HAEQKVKAMP SPPSTPVVMR PVPAETPKSI SIRSAVYLKM KQSGKHRVSK ATNGGAERVF  240
VDVDGGAKEE EKKDAKEEQG AGGLDFEVYT QGMFKTELCN KWEATGACSY GDLCQFAHGI  300
AQLRPVVRHP RYKTGVCRTV LAGVLCPFGH RCHFRHSIAP ADGHLLRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-20274337467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462967047
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808834.11e-109zinc finger CCCH domain-containing protein 39-like
SwissprotQ6L5G11e-101C3H39_ORYSJ; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A3L6R9Y51e-110A0A3L6R9Y5_PANMI; Zinc finger CCCH domain-containing protein 39-like
STRINGSi022648m1e-108(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.14e-44C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]