PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462966862
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family LBD
Protein Properties Length: 138aa    MW: 14349.3 Da    PI: 8.7055
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462966862genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.93.9e-3933123190
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                +C aCk+lrrkC+++C++apyf ++q +++fa+vhk+FGasnv+kll+++++e+r da+ +++yeA+ar+rdPvyG+v++i++lqqql+  
  462966862  33 PCGACKFLRRKCVNGCIFAPYFDSDQgAAHFAAVHKVFGASNVSKLLHQIRPEKRVDAVVTVCYEAQARLRDPVYGCVSHIFALQQQLHDD 123
                7***********************9989***********************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.99832134IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-3833122IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MSTCSSVMSG GGAGGVDGSS GNGGAGGGGP GGPCGACKFL RRKCVNGCIF APYFDSDQGA  60
AHFAAVHKVF GASNVSKLLH QIRPEKRVDA VVTVCYEAQA RLRDPVYGCV SHIFALQQQL  120
HDDRIVVSSL GFLMTRRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0361801e-104BT036180.1 Zea mays full-length cDNA clone ZM_BFb0099M02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400358.11e-52PREDICTED: LOB domain-containing protein 18-like
RefseqXP_011094569.16e-53PREDICTED: LOB domain-containing protein 18
SwissprotO813231e-48LBD30_ARATH; LOB domain-containing protein 30
TrEMBLA0A151TBP85e-54A0A151TBP8_CAJCA; LOB domain-containing protein 18
TrEMBLM0SXL22e-52M0SXL2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P11330_0014e-52(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33463782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.18e-50LBD family protein