PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462966017
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 300aa    MW: 31303.8 Da    PI: 10.0855
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462966017genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.4e-073559226
               -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
               k ++C  f+ t  C++G++C+F H 
  462966017 35 KSKPCTKFFSTAGCPFGASCHFLHN 59
               7789********************7 PP

2zf-CCCH201.2e-06101126227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                kt+ C+ f     Ck G++C+FaHg+
  462966017 101 KTRMCNKFNTAEGCKWGSKCHFAHGE 126
                89**********************96 PP

3zf-CCCH36.21e-11266291127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +kt+lC++f + G C +G+rC+FaHg+
  462966017 266 FKTKLCDNFNK-GSCTFGERCHFAHGE 291
                69*********.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.33360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.9153361IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-63461IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-83559IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-53559IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-1496131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-898130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.82199127IPR000571Zinc finger, CCCH-type
SMARTSM003560.8299126IPR000571Zinc finger, CCCH-type
SMARTSM003221.3E-9170240IPR004087K Homology domain
PROSITE profilePS5008414.592171235IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.5E-14171239IPR004088K Homology domain, type 1
SuperFamilySSF547914.68E-14173266IPR004088K Homology domain, type 1
CDDcd001051.15E-12173235No hitNo description
PfamPF000131.6E-10173236IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.9E-16263297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.286265292IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-7265291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-8265296IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9266291IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDPGRKRTAP EGTNGAGGAK RQRELETSQM GVGSKSKPCT KFFSTAGCPF GASCHFLHNF  60
PGGYQAVAKM TNLGGPPVPS PMGRMPMGPG VPDGPPTPSV KTRMCNKFNT AEGCKWGSKC  120
HFAHGERELG KPMPMDNTMG GPPMGPGPNG HFMPPPMPMP DMVPPSTFGA SATAKISVDA  180
SLAGGIIGKG GTNTKHISRV TGAKLAIRDN EADPNLKNIE LEGTFDQIKH ASAMVTELIV  240
RIGGKVPQQA KNPGRGSHAG GPGSNFKTKL CDNFNKGSCT FGERCHFAHG EGELRKPAAA
Cis-element ? help Back to Top
SourceLink
PlantRegMap462966017
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810913.10.0zinc finger CCCH domain-containing protein 44-like
SwissprotQ69XQ31e-170C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A3L6S1110.0A0A3L6S111_PANMI; Zinc finger CCCH domain-containing protein 44-like isoform X1
STRINGPavir.J02805.1.p1e-180(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-43C3H family protein