PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462965686
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family LBD
Protein Properties Length: 229aa    MW: 23707.5 Da    PI: 8.1459
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462965686genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.29e-4171061100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                +CaaCk+lrrkC+++Cv+apyfp ++p+kfanvhk+FGasnv+k+l++lp+++r da+ssl++eA+ar+rdPvyG+v+ i+ lq ++++++ ela++++e
  462965686   7 PCAACKLLRRKCTQGCVFAPYFPPDSPAKFANVHKVFGASNVSKILSELPQSQRGDAVSSLAFEADARLRDPVYGCVAYITVLQVRVNEARDELAAARKE 106
                7**********************************************************************************************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.5396107IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-407104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009954Biological Processproximal/distal pattern formation
GO:0009965Biological Processleaf morphogenesis
GO:0048441Biological Processpetal development
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSSSSSPCAA CKLLRRKCTQ GCVFAPYFPP DSPAKFANVH KVFGASNVSK ILSELPQSQR  60
GDAVSSLAFE ADARLRDPVY GCVAYITVLQ VRVNEARDEL AAARKELAGY IGPAAFAPLP  120
RRRPAAADGA ADPPAADGGG AAAGRRRGAG HDDEAGLRAG RGRCGAVRRR QQHAECASQA  180
QTAVALTYQM ESSPPPSSCG QSPAEEVVSQ QQHTDGSDEG SGGVALPAC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466819.14e-67hypothetical protein SORBIDRAFT_01g014650
RefseqXP_012704292.13e-67PREDICTED: LOB domain-containing protein 6
SwissprotQ9FKZ36e-55LBD36_ARATH; LOB domain-containing protein 36
TrEMBLW5ER211e-67W5ER21_WHEAT; Uncharacterized protein
STRINGSi036905m9e-67(Setaria italica)
STRINGSb01g014650.11e-66(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61433456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.12e-52ASYMMETRIC LEAVES 2-like 1