PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462965686
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family LBD
Protein Properties Length: 229aa    MW: 23707.5 Da    PI: 8.1459
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462965686genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.29e-4171061100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                +CaaCk+lrrkC+++Cv+apyfp ++p+kfanvhk+FGasnv+k+l++lp+++r da+ssl++eA+ar+rdPvyG+v+ i+ lq ++++++ ela++++e
  462965686   7 PCAACKLLRRKCTQGCVFAPYFPPDSPAKFANVHKVFGASNVSKILSELPQSQRGDAVSSLAFEADARLRDPVYGCVAYITVLQVRVNEARDELAAARKE 106
                7**********************************************************************************************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.5396107IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-407104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009954Biological Processproximal/distal pattern formation
GO:0009965Biological Processleaf morphogenesis
GO:0048441Biological Processpetal development
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSSSSSPCAA CKLLRRKCTQ GCVFAPYFPP DSPAKFANVH KVFGASNVSK ILSELPQSQR  60
GDAVSSLAFE ADARLRDPVY GCVAYITVLQ VRVNEARDEL AAARKELAGY IGPAAFAPLP  120
RRRPAAADGA ADPPAADGGG AAAGRRRGAG HDDEAGLRAG RGRCGAVRRR QQHAECASQA  180
QTAVALTYQM ESSPPPSSCG QSPAEEVVSQ QQHTDGSDEG SGGVALPAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-47611010114LOB family transfactor Ramosa2.1
5ly0_B2e-47611010114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462965686
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161127.13e-67LOB domain-containing protein 6-like
RefseqXP_020161128.13e-67LOB domain-containing protein 6-like
SwissprotQ9FKZ38e-54LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A1E5VYJ45e-66A0A1E5VYJ4_9POAL; LOB domain-containing protein 36
STRINGTraes_4DS_72ABC3EE5.21e-66(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61433456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.12e-52ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]