PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462962273
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 342aa    MW: 36737.6 Da    PI: 9.5301
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462962273genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.71.2e-1248104155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  462962273  48 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDMEEKAARAYDLAALKYWG 104
                78*******************433.44555535555.77******************98 PP

2AP248.71.9e-15149198355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  462962273 149 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 198
                9***************999754...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-1048104IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1448113IPR016177DNA-binding domain
CDDcd000181.73E-1648112No hitNo description
Gene3DG3DSA:3.30.730.106.5E-1349113IPR001471AP2/ERF domain
SMARTSM003801.3E-2249118IPR001471AP2/ERF domain
PROSITE profilePS5103217.35949112IPR001471AP2/ERF domain
PRINTSPR003671.6E-65061IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-18147207IPR016177DNA-binding domain
CDDcd000182.23E-22147208No hitNo description
Gene3DG3DSA:3.30.730.101.8E-18148206IPR001471AP2/ERF domain
SMARTSM003802.9E-33148212IPR001471AP2/ERF domain
PROSITE profilePS5103219.19148206IPR001471AP2/ERF domain
PfamPF008473.9E-10149198IPR001471AP2/ERF domain
PRINTSPR003671.6E-6188208IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGTASLSSCV TTAGAGDYGG ALAAAAMDGG RKRSGAAGQQ KVHRHRTSQY RGVTRHRWTG  60
RYEAHLWDNS CRKEGQTRKG RQGGYDMEEK AARAYDLAAL KYWGPSTHIN FPLEDYQEEL  120
EEMKNMTRQE YVAHLRRKSS GFSRGASMYR GVTRHHQHGR WQARIGRVSG NKDLYLGTFS  180
TQEEAAEAYD IAAIKFRGLN AVTNFDITRY DVDKIMASNT LLPGDLARRK KDDDVAAVSN  240
ANANAVTDAA PAALAPVAET WKIAAARAGG GEHQIGNQHH DVLSGEAFSS VLHDLQVATS  300
GAGGGAAQHM PMSSAASSLV TSLSNSREGS PDRGGGLATT SP
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462962273
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0882630.0BT088263.1 Zea mays full-length cDNA clone ZM_BFc0105N21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155443.11e-159AP2-like ethylene-responsive transcription factor ANT isoform X2
SwissprotQ84Z021e-153CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A3B6C5931e-162A0A3B6C593_WHEAT; Uncharacterized protein
TrEMBLA0A446M9B61e-162A0A446M9B6_TRITD; Uncharacterized protein
TrEMBLA0A446M9E31e-163A0A446M9E3_TRITD; Uncharacterized protein
STRINGTraes_2BL_569371098.21e-163(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-114AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]