PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462962072
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 213aa    MW: 23153.7 Da    PI: 8.3247
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462962072genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88e-133582355
               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               + h  +Er+RR+++ ++f  L +++P +     kK++Ka++L  A++Y+k+Lq
  462962072 35 QDHILAERKRREKLSQRFIALSKIVPGL-----KKMDKASVLGDAIKYVKQLQ 82
               67999***********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.8093281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-1835100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-103582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-173690IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.17E-133786No hitNo description
SMARTSM003536.1E-153887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MADAGFQAHP VKRSYDAMVA AVEALAPSRP ASQNQDHILA ERKRREKLSQ RFIALSKIVP  60
GLKKMDKASV LGDAIKYVKQ LQDQVKGLED VARRRPVEAA VLVKKTQLSA DDDDGSSCDE  120
NFVGGEAGAL PEIEARVSDR TVLVKIHCEN RKGVLIAALS EVEKLGLTIM NTNVLPFTSS  180
SLDITIMAMA GDDFCLSVKD IVKKLNQAFK SSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-143685857Transcription factor MYC2
5gnj_B2e-143685857Transcription factor MYC2
5gnj_E2e-143685857Transcription factor MYC2
5gnj_F2e-143685857Transcription factor MYC2
5gnj_G2e-143685857Transcription factor MYC2
5gnj_I2e-143685857Transcription factor MYC2
5gnj_M2e-143685857Transcription factor MYC2
5gnj_N2e-143685857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14045ERKRRE
24146RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462962072
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0365520.0BT036552.2 Zea mays full-length cDNA clone ZM_BFb0123D23 mRNA, complete cds.
GenBankEU9565960.0EU956596.1 Zea mays clone 1567551 symbiotic ammonium transporter mRNA, complete cds.
GenBankKJ7268630.0KJ726863.1 Zea mays clone pUT3404 bHLH transcription factor (bHLH137) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795190.11e-130transcription factor bHLH18-like
SwissprotQ9T0721e-54BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2S3III01e-129A0A2S3III0_9POAL; Uncharacterized protein
STRINGSi036393m1e-126(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-57bHLH family protein