PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462961643
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family LBD
Protein Properties Length: 96aa    MW: 10035.7 Da    PI: 9.5348
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462961643genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26062.51.1e-192368146
     DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkll 46
               +CaaCk+lrr+Ca++C+++pyf   +p+kfa+vhk+FGasnv+k+l
  462961643 23 PCAACKLLRRRCAQECPFSPYFSPLEPHKFAAVHKVFGASNVSKML 68
               7*******************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.9342296IPR004883Lateral organ boundaries, LOB
PfamPF031952.4E-192368IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MPAASGLGAA GAGPGSALNT ITPCAACKLL RRRCAQECPF SPYFSPLEPH KFAAVHKVFG  60
ASNVSKMLLV GRIQISLSKE VSSQDTKACS VTIRTE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126132e-60CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankAC1343412e-60AC134341.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0027N19, complete sequence.
GenBankAP0149612e-60AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295750.13e-33hypothetical protein CARUB_v10024870mg
SwissprotQ9AT616e-34LBD13_ARATH; LOB domain-containing protein 13
TrEMBLM7ZFV11e-35M7ZFV1_TRIUA; Uncharacterized protein
STRINGMLOC_56075.17e-34(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26303891
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.12e-32LOB domain-containing protein 13