PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462961130
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 164aa    MW: 17690.9 Da    PI: 8.4782
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462961130genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.8e-086687627
               -SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  6 CrffartGtCkyGdrCkFaHgp 27
               C++f rtGtCkyG++C++ H++
  462961130 66 CHHFVRTGTCKYGGSCRYFHPK 87
               ********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004518.6E-6338IPR003604Zinc finger, U1-type
SuperFamilySSF576671.13E-15447No hitNo description
PfamPF062209.9E-12539IPR013085Zinc finger, U1-C type
PROSITE profilePS5010313.8646088IPR000571Zinc finger, CCCH-type
SMARTSM003560.00436287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.1E-76489IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-66587IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-56586IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MPLGKYYCDY CDKQFQDTPA ARKRHLQGAQ HQRARAAWYD AIRHQDQHGG AASLLLPDGT  60
LAKGVCHHFV RTGTCKYGGS CRYFHPKPDG VSPALAAPGP GPGAMMQQSN IFGSQSNFVG  120
YQAAEINPFS GNILGGHTSW GNLPPSLQPP PEGGYPPLPF VDWG
Cis-element ? help Back to Top
SourceLink
PlantRegMap462961130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967856.11e-105zinc finger CCCH domain-containing protein 3
SwissprotQ0JP115e-78C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLK3XMN31e-104K3XMN3_SETIT; Uncharacterized protein
STRINGPavir.Eb00973.1.p1e-108(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126172326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.11e-27C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]