PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462960608
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family LBD
Protein Properties Length: 232aa    MW: 25363.6 Da    PI: 7.0613
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462960608genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.51.2e-294100192
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                +C++C+vlr++C+++C+++p++     p++q +++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +PvyG+vg+++++++ql+q++ 
  462960608   4 SCNGCRVLRKGCSDNCAIRPCLqwirsPDAQGNATVFLAKFYGRACLINLITAGPDHVRPAIFRSLLYEACGRMLNPVYGSVGLLWSGNWQLCQAAR 100
                6*************************99******************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.6333109IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-234101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDNCA IRPCLQWIRS PDAQGNATVF LAKFYGRACL INLITAGPDH  60
VRPAIFRSLL YEACGRMLNP VYGSVGLLWS GNWQLCQAAR RARPDTAASF ELVFSRPPSS  120
AVLVDVRQAQ PLSWAPAGQP ASQEYYSASH DAADSNTSVD TVEVSHVSQS GPEPETPREE  180
TDGREVGLDL ALGLLPTVHK TEQSWHVEKD QHDRFDEPAV KLGLGTTASR AR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462960608
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1005021e-100FP100502.1 Phyllostachys edulis cDNA clone: bphyem111j02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643695.17e-72PREDICTED: LOB domain-containing protein 40
SwissprotQ9M8862e-60LBD41_ARATH; LOB domain-containing protein 41
TrEMBLJ3KW272e-70J3KW27_ORYBR; Uncharacterized protein
STRINGOB01G11830.13e-71(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.16e-63LOB domain-containing protein 40