PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462960145
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 270aa    MW: 30079.3 Da    PI: 7.4038
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462960145genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2391.9e-124096155
        AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
               s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  462960145 40 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDIEEKAARAYDLAALKYWG 96
               78*******************433.44555535555.779999**************98 PP

2AP249.69.5e-16139190155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  462960145 139 SIYRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 190
                57****************999754...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.51E-1440105IPR016177DNA-binding domain
PfamPF008477.0E-104096IPR001471AP2/ERF domain
CDDcd000187.96E-1640103No hitNo description
SMARTSM003801.7E-2041110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-1241104IPR001471AP2/ERF domain
PROSITE profilePS5103216.88441104IPR001471AP2/ERF domain
PRINTSPR003678.5E-74253IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-18139199IPR016177DNA-binding domain
PfamPF008474.9E-11139190IPR001471AP2/ERF domain
CDDcd000185.36E-24139200No hitNo description
SMARTSM003803.9E-34140204IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-19140198IPR001471AP2/ERF domain
PROSITE profilePS5103219.137140198IPR001471AP2/ERF domain
PRINTSPR003678.5E-7180200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MSSSGSQAAA SCVTMQMAAA DPVEGSVHRK SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD  60
NSCRKEGQTR KGRQGGYDIE EKAARAYDLA ALKYWGPSTN INFTLEDYRE ELEEMKNMTR  120
QEYVAHLRRK SSGFSRGASI YRGVTRHHQH GRWQARIGRV SGNKDLYLGT FSTQEEAAEA  180
YDVAAIKFRG LNAVTNFDIT RYDVDKIMES STLLPAELAA AALPAPPTRT DEHGGQNHEQ  240
LLSSEAFSLL HDMVSVDAAA GDNAQHMSNA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462960145
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753181e-174AK375318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3090N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981612.11e-141AP2-like ethylene-responsive transcription factor ANT isoform X4
SwissprotQ84Z021e-136CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A1E5VRG81e-144A0A1E5VRG8_9POAL; AP2-like ethylene-responsive transcription factor ANT
STRINGGRMZM2G028151_P011e-140(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-122AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]