PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462959111
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 265aa    MW: 28215.9 Da    PI: 10.2395
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462959111genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH162.1e-051581951254
                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                R +++ +++  L++l+ +      +K + a++L +++eYIk L
  462959111 158 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 195
                677888999*******998.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.75146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-12156216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-9156211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.04E-6156199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MMPQADSHDQ NHQFLTNLGL ELLSSPISPA GGFRSSSPLR SLTEPAAVAK PLPGFQQYQQ  60
QQMMNQAPGN IREALQFSNN TPFWNPSPGI GAVEGAASLG TAKQSLRQSR PAGLANKSAL  120
EGAGDSSSII ARKANNDPTS LKKAKTGAPS PLPTFKVRKE KLGDRITALQ QLVSPFGKTD  180
TASVLHETIE YIKFLHEQVG SLSAPYLKNR QPVPHLKVSR DGSEAAAAKG DLTGRGLCLV  240
PISSTFAVAS ETPVDFWTPF GAAFR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462959111
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612835e-63BT061283.1 Zea mays full-length cDNA clone ZM_BFb0131G07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972712.11e-146transcription factor bHLH112
SwissprotQ8GXT32e-43BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A368RHW51e-146A0A368RHW5_SETIT; Uncharacterized protein
TrEMBLA0A368RHX51e-144A0A368RHX5_SETIT; Uncharacterized protein
TrEMBLK3YHY41e-144K3YHY4_SETIT; Uncharacterized protein
STRINGSi013853m1e-145(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-45bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]