PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462959036
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 260aa    MW: 27302.1 Da    PI: 8.2327
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462959036genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.41.9e-06171211954
                HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 r RR+r+ +++  L++l+P        K++ a++L +A  Y+k L
  462959036 171 ARLRRERVSERLRVLQRLVPGG-----SKMDTASMLDEAASYLKFL 211
                699*****************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.443162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.55E-11168216No hitNo description
SuperFamilySSF474599.03E-14168227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-12168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-10170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDASFGWAGA GQHVDDYFSR QAAGCARFEA DDAFLGACFG QQPCDGVVGG DVDGTCQVSS  60
NFGGCAAGAD DGDPLAAFLS SRTTSGDVVF DGSLLDAALA FSRELGGDGG GPVSNGGAMF  120
SSYDSGTRRQ PRRRRGGVAD VVHRVAHHHH RAAVPPRVVP GPGPAAGTVA ARLRRERVSE  180
RLRVLQRLVP GGSKMDTASM LDEAASYLKF LKSQVQELET LGTTSSSRSQ HYSYQSSSSS  240
NPRFLGFARS SNIPHAGYKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127134RRQPRRRR
2171176RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMap462959036
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1002085e-60AK100208.1 Oryza sativa Japonica Group cDNA clone:J023042H10, full insert sequence.
GenBankAK1061195e-60AK106119.1 Oryza sativa Japonica Group cDNA clone:001-207-E08, full insert sequence.
GenBankAP0032735e-60AP003273.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0510F09.
GenBankAP0033815e-60AP003381.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0692C11.
GenBankAP0149575e-60AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126095e-60CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankCT8312195e-60CT831219.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI223P22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311298.16e-35transcription factor bHLH84
RefseqXP_021311299.16e-35transcription factor bHLH84
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-10bHLH family protein