PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462959009
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 254aa    MW: 27929.9 Da    PI: 7.9773
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462959009genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.1e-1381128355
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                + h ++ErrRR+++ + f  L +++P +     +K +K++iL  +++Y+k+L+
  462959009  81 QEHVIAERRRREKMQQQFVALATIVPDL-----TKTDKISILGSTIKYVKQLE 128
                5799***********************9.....9*****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.79978127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-1081128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-1582143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-1782138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.28E-1183132No hitNo description
SMARTSM003531.4E-1284133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAPPLPNPFH PPSRSRSFGG PSFGEMTVKT EPGQPSSSTS ILSFGAQPPR TLSFSAGDWP  60
DGIEAVQQAP ERRSRAHLNT QEHVIAERRR REKMQQQFVA LATIVPDLTK TDKISILGST  120
IKYVKQLEEK VKALEEQSAP RTSEPAVFER KCRISSDNDD AGTSSGAISG YIPNVEASIH  180
GDTVLLKICC KERRGVLVMV FSELENHGLT IINTSALPYT DSCLSVTVTA KARPFVLQML  240
FIQLVLSYVL TFQE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18691ERRRRE
28792RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462959009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685524.14e-98transcription factor NAI1
RefseqXP_025798093.11e-100transcription factor bHLH18-like
TrEMBLA0A3L6SAV41e-110A0A3L6SAV4_PANMI; Uncharacterized protein
STRINGOB03G19470.12e-88(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-34bHLH family protein