PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462958851
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 840aa    MW: 91516.9 Da    PI: 5.3722
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462958851genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.4e-064565526
               --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
               +C+ +   G+C+ G++C++ H+
  462958851 45 ECNMYKM-GFCPNGPTCRYKHV 65
               6666666.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.011440IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.5961439IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.5774067IPR000571Zinc finger, CCCH-type
SMARTSM003560.00644266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5088232.066170291IPR007275YTH domain
PfamPF041464.1E-24177290IPR007275YTH domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:1900363Biological Processregulation of mRNA polyadenylation
GO:2000031Biological Processregulation of salicylic acid mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003723Molecular FunctionRNA binding
GO:0004521Molecular Functionendoribonuclease activity
GO:0005516Molecular Functioncalmodulin binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MKGEACGFLH QFDKARMPVC RFFRDFGECR EPDCAYKHSY DDVKECNMYK MGFCPNGPTC  60
RYKHVKLPGP PPPVEEVLQK ILQMRSFNKF GPHRNNIYNQ MERPHPPQGS GLPNQNSTDN  120
ATASAQAASV QQAQTMNQQT PQQQQKPNST DQAQGVSNGL SNQATRIAAP LPQGPSSCNR  180
ENLEISVQQG IWATQRSNEA KLNEAFESIE NGCAKMTSRI GGYIGGGNWK SAHGTAHYGR  240
NFSIQWLKLC ELSFQKTHHL RNPYNDNLPV KISRDCQELE PFIGEQLASL LYLEPDSELT  300
AMLTAAEAKR EEEKAKGVSA DEAADNQDIV LFDDNEEDEE EESEEEDESN GHESQGRGRG  360
RGMMWPPQMP MGRGVVPMMG GRGFPPNMMG DGFGFGGGFG MPDPFGMPRG FPPFGGPRFP  420
GDFPRGPMPG MVFPGRLPQP GGPFPMGLDM MMGPGRGPLM GGMGMGGPGR PNRPMGMAPF  480
MPPPPPNNRG AKREQRKPGG DRNDRYETSS DQGSRGHENT GNSGADGARS QSGDRYGRST  540
LRDDDSESEE EAAPRRSMPG DGSWSYALTL LLVKSRRGTV AMLTAAEAKR EEEKAKGVSA  600
DEAADNQDIV LFDDNEEDEE EESEEEDESN GHESQGRGRG RGMMWPPQMP MGRGVVPMMG  660
GRGFPPNMMG DGFGFGGGFG MPDPFGMPRG FPPFGGPRFP GDFPRGPMPG MVFPGRLPQP  720
GGPFPMGLDM MMGPGRGPLM GGMGMGGPGR PNRPMGMAPF MPPPPPNNRG AKREQRKPGG  780
DRNDRYETSS DQGSRGHENT GNSGADGARS QSGDRYGRST LRDDDSESEE EAAPRRSRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zuu_A2e-78161319218030-kDa cleavage and polyadenylation specificity factor 30
5zuu_B2e-78161319218030-kDa cleavage and polyadenylation specificity factor 30
5zuu_C2e-78161319218030-kDa cleavage and polyadenylation specificity factor 30
5zuu_D2e-78161319218030-kDa cleavage and polyadenylation specificity factor 30
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462958851
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657248.20.0PREDICTED: zinc finger CCCH domain-containing protein 45
SwissprotQ0DA500.0C3H45_ORYSJ; Zinc finger CCCH domain-containing protein 45
TrEMBLJ3MGU60.0J3MGU6_ORYBR; Uncharacterized protein
STRINGOB06G32400.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59892428