PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462958035
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 327aa    MW: 35384.5 Da    PI: 9.3357
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462958035genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.61.8e-12253278126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +ktelC+ + +tG C yGd C+FaHg
  462958035 253 FKTELCNKWEATGACLYGDLCQFAHG 278
                79***********************8 PP

2zf-CCCH19.91.3e-06291316126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                ykt+ Cr  +++  C+yG rC+F H+
  462958035 291 YKTKVCRMVLAGILCPYGHRCHFRHS 316
                9**********99**********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.2E-15248285IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-9249284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098252280IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-7252279IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-9253278IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-11286317IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-7289317IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.169290318IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4290317IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEALLPAGPH DGLHAAAFGP MPFGLGDGRF SSPNLLTNGG DLFWGGYYPH PFGIVPVPCY  60
SASPSPPAAS CSRSSSDTSS VLDVGDDSPA ALVRLALKYQ EAAGRYHLFL SHLVDTTYGE  120
VALRRENDLL RSANVDLVRR IVLVGGKHSS AIALADDFRR LTHAKAMPPP PSPQVVMRPV  180
PAETPKSISI RSAVYLKMKQ SGKHRVSKTT NDDARRVFVG TDGGAKEEDG KKGAKKEQGA  240
GGLEFEVYTQ GMFKTELCNK WEATGACLYG DLCQFAHGIA QLRPVTRHPR YKTKVCRMVL  300
AGILCPYGHR CHFRHSIAPA DGHLLRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-20253316467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462958035
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808834.11e-112zinc finger CCCH domain-containing protein 39-like
SwissprotQ6L5G11e-104C3H39_ORYSJ; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A3L6R9Y51e-111A0A3L6R9Y5_PANMI; Zinc finger CCCH domain-containing protein 39-like
STRINGSi022648m1e-111(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.14e-46C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]