PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462956698
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 563aa    MW: 60480.2 Da    PI: 6.9493
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462956698genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.16.8e-16431482155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  462956698 431 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 482
                89****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.8E-4350402IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-7365397IPR016177DNA-binding domain
PROSITE profilePS510329.282367396IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-6367396IPR001471AP2/ERF domain
PfamPF008472.4E-10431482IPR001471AP2/ERF domain
CDDcd000189.33E-25431492No hitNo description
SuperFamilySSF541714.25E-18431492IPR016177DNA-binding domain
PROSITE profilePS5103219.467432490IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-18432491IPR001471AP2/ERF domain
SMARTSM003808.1E-34432496IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MEAFNRGPQE TQDWNIRGMD YNGGASELSM LVGSSGGGNG KRAVEDQSEP KLEDFLGGNS  60
FVSEQDQSGG YLFSGVPMAS STNSNSGSNT MELSMIKTWL RNNQVPQPPA TTHQPPQAEE  120
MSTDASANSF ECSDSLGRNG TPPATTHQPP QAEEMSTDAS ANSFGCSDSL GRNNGTVATA  180
GSSQSLALSM STGSHQLPMV VAGGGGGSAS GAAPAASEST SSENKRASGA MDSPGGGAVE  240
AVPRKSIDTF GQRTSIYRGI DGQGVMRLIY GIIVVGGRAR VARVGKFLGI AQYVHLMLLI  300
KHCVFYSSTH LLHRRISYTG RQIYNVQFIL VCMHQPTFFA LTFTFSILDR CSYIYDCDLP  360
FLFLNTGGYD KEDKAARAYD LAALKYWGTT TTTNFPIGNY EKELDEMKHM TRQEYIAYLR  420
RNSSGFSRGA SKYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF  480
RGLNAVTNFD MSRYDVKSIL ESSTLPLIGY DAAAMAVGDP YAAARTNGGG YQFSQGSAAS  540
TVSIARANGY SANNWTSPFN GMG
Cis-element ? help Back to Top
SourceLink
PlantRegMap462956698
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557321e-176EU955732.1 Zea mays clone 1543867 protein BABY BOOM 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623974.11e-89AP2-like ethylene-responsive transcription factor PLT2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.15e-79AP2 family protein