PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462956375
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 303aa    MW: 33656 Da    PI: 5.1413
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462956375genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.21.8e-07114133323
        AP2   3 ykGVrwdkkrgrWvAeIrdps 23 
                y+GVr +k +g+W+AeIr p 
  462956375 114 YRGVRLRK-WGKWAAEIRNPF 133
                9*****99.*********953 PP

2AP243.67.2e-14142185350
        AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaar 50 
                y+GVr +k +g+W+AeIr  +     + kr +lg+f+ta  A  a+  a 
  462956375 142 YRGVRLRK-WGKWAAEIRNpF-----TgKRQWLGTFDTAAAASTAYLSAS 185
                9*****99.**********55.....45**********999999997765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.16E-5113137IPR016177DNA-binding domain
PROSITE profilePS5103210.441113144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-8113137IPR001471AP2/ERF domain
PRINTSPR003674.3E-8114125IPR001471AP2/ERF domain
PROSITE profilePS5103217.187141203IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-15141190IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-18141192IPR001471AP2/ERF domain
SMARTSM003801.1E-11141195IPR001471AP2/ERF domain
PfamPF008473.3E-8141180IPR001471AP2/ERF domain
CDDcd000182.04E-17142188No hitNo description
PRINTSPR003674.3E-8164180IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAPLNHQQML IKKALAKKPS KTKRISGFGL KPSTGLLKAK SQPPPAAMAQ PRRRVRILFE  60
DPYATDSDSD DEEAGPPKSK RFSFELFVGK ATPKPVMPAA AVAANTSGGQ PESYRGVRLR  120
KWGKWAAEIR NPFTGKRQPE SYRGVRLRKW GKWAAEIRNP FTGKRQWLGT FDTAAAASTA  180
YLSASRSFAE EKRRRQPAPT PIPPATDAAQ LPDDPEFYQD LLRGLQLPDI DPLDFRAGLD  240
ALDVSEVPFG LDDDQDLLLG DFGDEELELD LDLDDIDDVF PEMSGYDLGR GMDDFLQTVD  300
FCV
Cis-element ? help Back to Top
SourceLink
PlantRegMap462956375
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968058.11e-123ethylene-responsive transcription factor ERF118
RefseqXP_025817249.11e-123ethylene-responsive transcription factor ERF118-like
TrEMBLA0A0A9TUH91e-124A0A0A9TUH9_ARUDO; Uncharacterized protein
STRINGSi002186m1e-123(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129302528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.23e-12ERF family protein