PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462956243
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 494aa    MW: 53196.5 Da    PI: 7.1127
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462956243genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.22.3e-16151197455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn  ErrRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k Lq
  462956243 151 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 197
                5*************************8.....6******************9 PP

2HLH39.97.7e-133213601155
                HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                rRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k Lq
  462956243 321 RRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 360
                8******************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-20144205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.006147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-17150201No hitNo description
SuperFamilySSF474594.06E-21150225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-14151197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-17153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.246310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-13317365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16321388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-10321360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.27E-13321364No hitNo description
Gene3DG3DSA:4.10.280.101.1E-15321368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MNFTFFSRPL QRPQASAAAP PSNAVETAVA QTAASRLRST PLFSEQRMAW LEPAPQEPTS  60
ATEHHHRHHA EAAATVTQHR LHPDPRAPDA TAAVTTSSVC SGNGDRTQTT RSGHQTTVEC  120
SVSQDEDGDD EGGAMRRSAA RGTKRTRTAE VHNLSERRRR DRINEKMRAL QELIPNCNKI  180
DKASMLEEAI EYLKTLQLQV QMMSMGPGLC MPPMMLPAMQ HMQMPHMPHF PHLGMGLGFG  240
MGAPSFDMLP RLAGAQFPCP VMPGAPPMAM PPGSMFGLPG QMTFPPHMAG IAPAEQMEAA  300
AQAPGGAGAG DHPPVPVTTE RRRDRINEKM RALQELIPNC NKIDKASMLE EAIEYLKTLQ  360
LQVQMMSMGP GLCMPPMMLP AMQHMQMPHM PHFPHLGMGL GFGMGAPSFD MLPRLAGAQF  420
PCPVMPGAPP MAMPPGSMFG LPGQMTFPPH MAGIAPAEQM EAAAQAPGGA GAGDHPPVPV  480
TTEGEPKLQH PKQT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160ERRRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462956243
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3597002e-91AK359700.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1101A22.
GenBankAK3617092e-91AK361709.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1146O18.
GenBankAK3765942e-91AK376594.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3128I15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662938.13e-98transcription factor APG isoform X2
SwissprotQ0JNI98e-82PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A0A9P9871e-118A0A0A9P987_ARUDO; Uncharacterized protein
STRINGGRMZM2G062541_P012e-97(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.26e-32phytochrome interacting factor 3
Publications ? help Back to Top
  1. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]