PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462955182
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 168aa    MW: 19248.8 Da    PI: 9.4529
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462955182genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.49.3e-1711971399
               TT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..EEEEE-S CS
         B3 13 sgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld.grsefelvvkvfrk 99
               ++r+v++kk+a +h   +++s+++tl+ + + ++W+ ++ y+++++r ++l++ W +Fv +n+++ gD+++F  + gr++f+++v ++r+
  462955182 11 NCRIVISKKYAFTHF--PHKSMDVTLQRPGNsKKWQPRF-YKRNDNRlCMLKGQWLDFVCDNHVQKGDICLFLPIkGRRKFTFMVYLLRT 97
               79*********9997..56899******5555*******.88888888*************************77355*******99997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100173.44E-19193No hitNo description
Gene3DG3DSA:2.40.330.101.4E-16196IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.575198IPR003340B3 DNA binding domain
SMARTSM010193.3E-5198IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-17296IPR015300DNA-binding pseudobarrel domain
PfamPF023628.4E-151197IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MTKSTIGDAI NCRIVISKKY AFTHFPHKSM DVTLQRPGNS KKWQPRFYKR NDNRLCMLKG  60
QWLDFVCDNH VQKGDICLFL PIKGRRKFTF MVYLLRTSAS GSSRVETGFE RTGPHYGRSS  120
TKMASTVHIK EESTEGENVS MENGKHETSE EYQESDSGIN VSMENGMH
Cis-element ? help Back to Top
SourceLink
PlantRegMap462955182
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679276.11e-50B3 domain-containing protein Os03g0619600
RefseqXP_022685401.18e-51B3 domain-containing protein Os03g0619800-like, partial
SwissprotQ6AV229e-38Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLA0A3L6TPZ34e-50A0A3L6TPZ3_PANMI; B3 domain-containing protein
TrEMBLK4AJW89e-50K4AJW8_SETIT; Uncharacterized protein
STRINGSi039191m2e-50(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]