PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462954955
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 258aa    MW: 28692 Da    PI: 5.8711
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462954955genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.15e-111832231055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                ++RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  462954955 183 KKRRERINEKLRILQQLIPNG-----TKVDISTMLEEAVQYVKFLQ 223
                9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-14170238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-13171235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.04173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-11179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.99E-12182227No hitNo description
PfamPF000102.6E-8183223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
METKFTSVWS EESEMIAHLQ SMFWNNSVSD ANLSSCNTGT DSCVTASTMP SGLLPHFESQ  60
CYNAVSLMNT AMDWCLDQKS QSITATTNVV SGDKRMFPTD EPRKKSRSSK KKLRTVTQLS  120
RTLSSSTLDD ESNAQLANQS NSWSCSSEDD SNGVCEEPFA LKQSDSSSGR SRSSKNSQSL  180
YAKKRRERIN EKLRILQQLI PNGTKVDIST MLEEAVQYVK FLQLQIKLLS SDDTWMYAPL  240
AYNGMGIDLS VSTAAYQS
Cis-element ? help Back to Top
SourceLink
PlantRegMap462954955
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980781.12e-98transcription factor bHLH139
TrEMBLK3ZNR24e-97K3ZNR2_SETIT; Uncharacterized protein
STRINGSi028242m7e-98(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140022528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.16e-40bHLH family protein