PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462954648
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 906aa    MW: 100037 Da    PI: 9.6167
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462954648genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.7e-07269290426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                e C +f + G C++G++C+FaH+
  462954648 269 EQCYNFVK-GRCNRGASCRFAHD 290
                56******.*************7 PP

2zf-CCCH20.58.4e-07329348525
                --SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                +C+ffa +G+C++G++C++ H
  462954648 329 PCKFFA-SGQCRRGANCPYLH 348
                8**555.5************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0031183207IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.404186208IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001186206IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15265292IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013266291IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-5269290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-5270291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.155324351IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5324350IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6325349IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4327350IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-5328348IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 906 aa     Download sequence    Send to blast
MTGESRRHRS KWDTTEGAPD VVEISEDESP ERKDIHTDGV NKDIKEIQSK ASSERSQPPK  60
LADEHDNKGW GKAGLEKPHG NQGINRYADD RRRGDGWGIA LNRGYSSRMP SDPDPWRPRS  120
RSPSPRGVWN RPRRNRSRSR SRSRNRSRSR SRSRGRGRGR SRSPYFADRG PEWRIERGRT  180
SGAPLPCRDF VAGRCRRGVN CRFPHEDGGH RPFEEHHPAG PRERYGYPSK EFTDSREQND  240
FLQSRQPRGR YDDETWERSE PRRDYRSAEQ CYNFVKGRCN RGASCRFAHD DSAPQGGWRD  300
ETRQSAYDRV GPDSSYGNRT EHRRVNKNPC KFFASGQCRR GANCPYLHEE APQSQMGLSA  360
PDEPSDYSNV RTGRGNFSNW GDQNNAVRAT SQIVSRDDRE NPVSQNIGRN VSSYEYENHH  420
PKDAGKSQYQ IITQDDFGSQ VHKKENATSQ QPQLFTSVQA NVDSMNNDKV SGMDGQSAPG  480
TAGNLSMHTG MHASNVTENL AQILQRQDAI PEPPTLPVTT HLQNNTSSLP SNSHMQQSNF  540
SVHPQEQFLV TQAAVNNSTH NVQGQAVAPH MGHSHVGYGL GAQALPNLSA HNGHNFSIPG  600
QVPQDLPTSG HTGQNQASIE RLGQDSGAQA QSIQNMQNFQ PVAPNAQLQT QSLQGLPIVP  660
TSSSADIIGG SVSHNAAKSE DIQRVTASLA QYFGNAGLSA GAVGLPSSDP LNSSLMVTSS  720
AAPLAVQPNA WPWPQQQAGM VQPAPSVPSE LHQQAPQTFQ MPVAVGSNNG HSMPLPHAGA  780
STGQAAASVV NETTPKEKKK VETKDTDAEV DEDGDNKKGK DSKALKMFKI ALADFVKEAL  840
KPTWKEGQMS REIHKTIVKK VVDKVTSTVE NTPPTKEKID IYMSFSKEKL NKLVQAYVGK  900
YATKTT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147155RSRSRSRGR
2151161RSRGRGRGRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462954648
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820462.10.0zinc finger CCCH domain-containing protein 55-like
RefseqXP_025820463.10.0zinc finger CCCH domain-containing protein 55-like
SwissprotQ6YYC00.0C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55
TrEMBLA0A2T7D3630.0A0A2T7D363_9POAL; Uncharacterized protein
STRINGPavir.Fa02279.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77663443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-10C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]