PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462954421
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 268aa    MW: 29237.5 Da    PI: 9.2787
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462954421genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.4e-12204249655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri +++ +L+el+P+     +k  + a++L +Ave+Ik Lq
  462954421 204 SIAERERRTRISEKLRKLQELVPNM----DKQTTTADMLDLAVEHIKGLQ 249
                689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.449198248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-15201262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.52E-12202253No hitNo description
Gene3DG3DSA:4.10.280.102.3E-14203261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-12204254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9204249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDMLARHSSS PAGFFSNLMT MENGYPSSKA GGSGAEPHHS STASGNASRK MKPSSQLNFT  60
RAQQQGAAGH LTQISEDGGF PQGLLGGDRA XXXXXXXXXX XXXXXXXXXX XXXXXGDRAG  120
RSSGESSAGA GASRSFSGGF SIVGPWEESR DIISTLGAYD PQFNGAMTSS ALEMAGMDRY  180
LQLQQDQVPF KVRAKRGCAT HPRSIAERER RTRISEKLRK LQELVPNMDK QTTTADMLDL  240
AVEHIKGLQS ELQNLKHEQE KCTCCRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462954421
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547251e-100EU954725.1 Zea mays clone 1479278 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808991.11e-116transcription factor bHLH128-like
TrEMBLA0A1E5USQ61e-122A0A1E5USQ6_9POAL; Transcription factor bHLH128
STRINGPavir.Aa01423.1.p1e-122(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-46bHLH family protein