PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462953391
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 382aa    MW: 42557.7 Da    PI: 7.8734
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462953391genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.36.2e-0992114325
                S---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                +e+C+++a  G Ck+G  Ck++H
  462953391  92 QEECKYYATPGGCKFGKACKYIH 114
                589******************** PP

2zf-CCCH375.9e-12139163226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                ++++C++++rtG Cky  +CkF+H+
  462953391 139 GEKECPYYMRTGSCKYSTNCKFHHP 163
                7899********************9 PP

3zf-CCCH25.62.1e-08331356227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                +++ C ++ r+G CkyG++C F+H++
  462953391 331 DQPVCTYYGRFGVCKYGPSCMFNHPF 356
                6899********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.003889116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8489117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-593117IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-693114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-495116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.802137165IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-6137164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6139164IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9139163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-5143162IPR000571Zinc finger, CCCH-type
SMARTSM003560.015283310IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.911283311IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5287313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.267329357IPR000571Zinc finger, CCCH-type
SMARTSM003560.0036329356IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-5330356IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-6331356IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
VPREDYEGLT PDISDSSGFD DKGSASNSVQ GGDDKGSANT SENRRKTSYE IAAEPEKGSY  60
FKKLDEANVT KHKFPRGAKD KRKETVGEGN AQEECKYYAT PGGCKFGKAC KYIHREGKEG  120
KIDAEKVDLN FLGLPLRPGE KECPYYMRTG SCKYSTNCKF HHPDPSNVSS KEPVMEHEND  180
DTPQQNVQGP SQTTVPIWPD QRAMNEQHVP FLAPAQSYSA GMMPPQGMYP SPDWSGYHQV  240
RLNPYYPPGV PFQHFPAPVN HPMYKPADIP GHQQMPTDEY PERPGQPECQ HFVRSGFCKY  300
KMKCRYHHPR SRLPAPLTGG LSPLGLPIKP DQPVCTYYGR FGVCKYGPSC MFNHPFNFGP  360
PPVPAAGPPL HGQYPTPANF TV
Cis-element ? help Back to Top
SourceLink
PlantRegMap462953391
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807655.10.0zinc finger CCCH domain-containing protein 65-like isoform X1
SwissprotQ2QTY20.0C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBLA0A2T7EFS50.0A0A2T7EFS5_9POAL; Uncharacterized protein
STRINGPavir.Ha00283.1.p0.0(Panicum virgatum)
STRINGSb08g012360.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79283548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.12e-59C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]