PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462953340
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 392aa    MW: 41560.8 Da    PI: 8.1039
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462953340genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.3e-12321366655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri +++ +L+el+P+      k  + a+++ +Av+YIk+Lq
  462953340 321 SIAERVRRTRISERIRKLQELVPNM----EKQTNTADMVDLAVDYIKELQ 366
                689*********************7....467*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.773315365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-15318377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.79E-12319369No hitNo description
Gene3DG3DSA:4.10.280.103.2E-14320386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11321371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9321366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MYGSVVSKDL NLPATGARTP TPMSSPGLLR YRSAPSNLLD QVCAEGFQAA EAGAAGHRPD  60
HAADAALARF LAGHHAEIVD CKPPRPAAAA HHFLDDAASM ASQHQHHHQQ QLMYQSQQQQ  120
QQQQMAAMEG LYRTLSSGGT EPAAAAVGSG NSSLLRQSSS PAGFLNHLNM DNGYGNMLRA  180
GGMSGGFRNG GDARLKGQLS YPSRQGSVMS QISEMGSEEL GGSSPEAGXX EAGSNGAAAR  240
SYSGIPAGYP MGSSGWDVDA SPDQGHLSGA KRPRDAASDP AAHADGKASA DMAAIEKFLQ  300
FQDAVPCKIR AKRGCATHPR SIAERVRRTR ISERIRKLQE LVPNMEKQTN TADMVDLAVD  360
YIKELQKQVT VLNDSRAKCT CSASKLHNQF TC
Cis-element ? help Back to Top
SourceLink
PlantRegMap462953340
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9768151e-109EU976815.1 Zea mays clone 990854 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957179.11e-162transcription factor bHLH130 isoform X2
TrEMBLA0A0A9VBR81e-177A0A0A9VBR8_ARUDO; Uncharacterized protein
STRINGPavir.J00377.1.p1e-161(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-38bHLH family protein