PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462952349
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 162aa    MW: 17911.1 Da    PI: 10.3535
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462952349genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.28.3e-08114160751
        AP2   7 rwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaark 51 
                ++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++
  462952349 114 SRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDMEEKAARAYDLAAL 160
                79*************433.44555535555.77**************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.431105162IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-6114160IPR016177DNA-binding domain
PfamPF008473.5E-5114160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-5115160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MSSGSTQAAS CVTMQMGGAH AAADPVAEYI AMEGSKKRAT VDRGAGGGQN KPTVHRKSID  60
TFGQRTSQYR GVTRYPTPPC ARNATGRFHS WIPCSIAEWL LTLTRARGFP RCKSRHRWTG  120
RYEAHLWDNS CRKEGQTRKG RQGGYDMEEK AARAYDLAAL ND
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462952349
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753182e-36AK375318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3090N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796942.18e-48AP2-like ethylene-responsive transcription factor CRL5
SwissprotQ84Z023e-32CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLK4A6K02e-54K4A6K0_SETIT; Uncharacterized protein
STRINGSi034505m3e-55(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.13e-31AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]