PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462951742
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 599aa    MW: 65557.4 Da    PI: 8.601
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462951742genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.8e-11140188255
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r++    Er+RR r+ +++ eLr+l+P+      +K++Ka+i   AveY+++Lq
  462951742 140 RAKTTVSERKRRVRMQQKLYELRSLVPNI-----TKMDKASIIADAVEYVRKLQ 188
                5667789*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-14136196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-14137191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.504138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.67E-12140192No hitNo description
PfamPF000109.5E-9140188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-12144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.10.245.106.3E-29373464IPR003121SWIB/MDM2 domain
SuperFamilySSF475928.72E-26373463IPR003121SWIB/MDM2 domain
SMARTSM001511.9E-21379458IPR019835SWIB domain
PfamPF022013.8E-23382453IPR003121SWIB/MDM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MDQHSLALQH LSPHDHLMVS ACFFNACGSA AHFSFSSGGG AGGLIAAPVS LDQCEWVQNG  60
LMQLGGEVFH GGVSITSVGT AADCQPWRCD GGGSSDGPRP AAAGVSFDGD GDGGEQQGVR  120
DQLATELNRG GNVAGERRDR AKTTVSERKR RVRMQQKLYE LRSLVPNITK MDKASIIADA  180
VEYVRKLQEE IAALPTSTRQ DAQNDVDAGS TSTSDGARRA GGARGRDAGR RGLQFESRVD  240
AALARKKVDI QEALKTPPSL QRTLRIYVFN TFANQGPCAI PPPKNADPPT WSLKIIGRVL  300
EDGAELDPAS VVPKHNPVYP KFSQFFKRVT IALDPSLYPE NPLIIWENAR SAAPQEGFEV  360
KRKGDKEFVA NIRLEMNYTP EKFKLSQPLM EVLGVEVDTR ARVIAALWQY IKAKKLQNPS  420
DPSYFMCDPQ LKKVFGEDKL KFAMLSQKIS QHLGAPPPIN LEHKIKLSGN GAHGSACYDV  480
LVDVPFPLQK EIMAFLANTE KHKDIEACDE VISASIKKIH EHRRRRAFFL GFSQSPVEFI  540
NAMIASQSKD LKLVAGEANR SVEKERRADF YNQPWVEDAV IRYLNRKPAS DGPGGAGGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1v31_A4e-32379453882hypothetical protein RAFL11-05-P19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462951742
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020396562.10.0SWI/SNF complex component SNF12 homolog
SwissprotQ9FMT40.0SNF12_ARATH; SWI/SNF complex component SNF12 homolog
TrEMBLA0A3L6RUV60.0A0A3L6RUV6_PANMI; Uncharacterized protein
STRINGSb02g041010.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP594933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.16e-18FER-like regulator of iron uptake
Publications ? help Back to Top
  1. Meinke D,Sweeney C,Muralla R
    Integrating the genetic and physical maps of Arabidopsis thaliana: identification of mapped alleles of cloned essential (EMB) genes.
    PLoS ONE, 2009. 4(10): p. e7386
    [PMID:19812694]
  2. Campi M,D'Andrea L,Emiliani J,Casati P
    Participation of chromatin-remodeling proteins in the repair of ultraviolet-B-damaged DNA.
    Plant Physiol., 2012. 158(2): p. 981-95
    [PMID:22170978]
  3. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]
  4. Jégu T, et al.
    A SWI/SNF Chromatin Remodelling Protein Controls Cytokinin Production through the Regulation of Chromatin Architecture.
    PLoS ONE, 2015. 10(10): p. e0138276
    [PMID:26457678]
  5. Jégu T, et al.
    The Arabidopsis SWI/SNF protein BAF60 mediates seedling growth control by modulating DNA accessibility.
    Genome Biol., 2017. 18(1): p. 114
    [PMID:28619072]