PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462951181
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 429aa    MW: 47351.5 Da    PI: 8.8703
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462951181genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.12e-102347327
               S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
               ++ C++++rtG C +G +CkF+H+p
  462951181 23 EPDCSYYMRTGLCGFGMTCKFNHPP 47
               789********************97 PP

2zf-CCCH391.4e-126892327
               S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
               +++C++++rtGtCk+G++CkF+H++
  462951181 68 QPECQYYLRTGTCKFGATCKFHHPR 92
               799********************96 PP

3zf-CCCH40.16.3e-13266291227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C+f+++tG Ck+G+ CkF+H++
  462951181 266 DQPECQFYMKTGDCKFGAVCKFNHPK 291
                689*********************96 PP

4zf-CCCH35.41.8e-11328352327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C f++r+G Ck+G++CkF H++
  462951181 328 EPICTFYSRYGMCKFGPNCKFDHPM 352
                799********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.2022048IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-42047IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-82347IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-52548IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.4786593IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-56592IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-106892IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-66994IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-57193IPR000571Zinc finger, CCCH-type
SMARTSM00356110110129IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.887116130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.455264292IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-5264291IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9266291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5267293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-5270292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5322351IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.648325353IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4325352IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-8328352IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4330350IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MWQMTLGGGE SLEPGPYPER IGEPDCSYYM RTGLCGFGMT CKFNHPPNRK LAVAAARMKG  60
EYPYRAGQPE CQYYLRTGTC KFGATCKFHH PREKAAVTTH VQLNVLGYPL RPFIRQCKFA  120
STCKFHHPQP SNTGAALHGS VYSPGQSATS PGQHTYPGAV SNWAMSRSAS YIASPRWPGH  180
SAYAQVIVPQ SLVQVPGWNP YAAQMGSTSP DHQQRTPGTT QYYQGTYQSE TTGMAQHGMF  240
PSYQGGSVPV GHYATQGENI FPERPDQPEC QFYMKTGDCK FGAVCKFNHP KERLIPAPNC  300
ALNPLGLPLR PHNLSKWFKE FCPKFHGEPI CTFYSRYGMC KFGPNCKFDH PMGTLMYGTA  360
TSPRDDAPTM NYQLEPSPRQ SERFLDGGSG RSHRISQSDS QQIPSENGSM GVVKAGHADR  420
ASGCVKLTV
Cis-element ? help Back to Top
SourceLink
PlantRegMap462951181
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810066.10.0zinc finger CCCH domain-containing protein 66
SwissprotQ2QT650.0C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A3L6REA40.0A0A3L6REA4_PANMI; Zinc finger CCCH domain-containing protein 66-like isoform X2
STRINGBRADI4G08050.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-131zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]